Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

M Yao, S Zhang, Q Lu, X Chen, SY Zhang… - Molecular …, 2022 - Wiley Online Library
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …

Integration of DNA-based approaches in aquatic ecological assessment using benthic macroinvertebrates

S Duarte, BR Leite, MJ Feio, FO Costa, AF Filipe - Water, 2021 - mdpi.com
Benthic macroinvertebrates are among the most used biological quality elements for
assessing the condition of all types of aquatic ecosystems worldwide (ie, fresh water …

To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography

A Antich, C Palacin, OS Wangensteen, X Turon - BMC bioinformatics, 2021 - Springer
Background The recent blooming of metabarcoding applications to biodiversity studies
comes with some relevant methodological debates. One such issue concerns the treatment …

Seasonality of primary production explains the richness of pioneering benthic communities

M Cecchetto, A Dettai, C Gallut, M Obst… - Nature …, 2024 - nature.com
A pattern of increasing species richness from the poles to the equator is frequently observed
in many animal taxa. Ecological limits, determined by the abiotic conditions and biotic …

[HTML][HTML] Evaluating biodiversity for coral reef reformation and monitoring on complex 3D structures using environmental DNA (eDNA) metabarcoding

N Levy, N Simon-Blecher, S Ben-Ezra, M Yuval… - Science of The Total …, 2023 - Elsevier
Quantifying coral reef biodiversity is challenging for cryptofauna and organisms in early life
stages. We demonstrate the utility of eDNA metabarcoding as a tool for comprehensively …

Seq'and ARMS shall find: DNA (meta) barcoding of Autonomous Reef Monitoring Structures across the tree of life uncovers hidden cryptobiome of tropical urban coral …

YCA Ip, JJM Chang, RM Oh, ZBR Quek… - Molecular …, 2023 - Wiley Online Library
Coral reefs are among the richest marine ecosystems on Earth, but there remains much
diversity hidden within cavities of complex reef structures awaiting discovery. While the …

Spineless and overlooked: DNA metabarcoding of autonomous reef monitoring structures reveals intra‐and interspecific genetic diversity in Mediterranean …

A Thomasdotter, P Shum, F Mugnai… - Molecular Ecology …, 2023 - Wiley Online Library
The ability to gather genetic information using DNA metabarcoding of bulk samples obtained
directly from the environment is crucial to determine biodiversity baselines and understand …

Biodiversity monitoring using environmental DNA

N Rodríguez-Ezpeleta, L Zinger, A Kinziger, HM Bik… - 2021 - digital.csic.es
Monitoring biodiversity is essential to protect, preserve and restore ecosystems, particularly
in the context of current challenges such as climate change, habitat destruction and …

Discovering marine biodiversity in the 21st century

AD Rogers, W Appeltans, J Assis, LT Ballance… - Advances in Marine …, 2022 - Elsevier
We review the current knowledge of the biodiversity of the ocean as well as the levels of
decline and threat for species and habitats. The lack of understanding of the distribution of …

Net overboard: Comparing marine eDNA sampling methodologies at sea to unravel marine biodiversity

U von Ammon, X Pochon, P Casanovas… - Molecular Ecology …, 2023 - Wiley Online Library
Environmental DNA (eDNA) analyses are powerful for describing marine biodiversity but
must be optimized for their effective use in routine monitoring. To maximize eDNA detection …