Choosing and using a plant DNA barcode

PM Hollingsworth, SW Graham, DP Little - PloS one, 2011 - journals.plos.org
The main aim of DNA barcoding is to establish a shared community resource of DNA
sequences that can be used for organismal identification and taxonomic clarification. This …

A structural phylogenetic map for chloroplast photosynthesis

JF Allen, WBM de Paula, S Puthiyaveetil, J Nield - Trends in plant science, 2011 - cell.com
Chloroplasts are cytoplasmic organelles and the sites of photosynthesis in eukaryotic cells.
Advances in structural biology and comparative genomics allow us to identify individual …

Orchid phylogenomics and multiple drivers of their extraordinary diversification

TJ Givnish, D Spalink, M Ames… - … of the Royal …, 2015 - royalsocietypublishing.org
Orchids are the most diverse family of angiosperms, with over 25 000 species, more than
mammals, birds and reptiles combined. Tests of hypotheses to account for such diversity …

From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

BR Ruhfel, MA Gitzendanner, PS Soltis… - BMC evolutionary …, 2014 - Springer
Background Next-generation sequencing has provided a wealth of plastid genome
sequence data from an increasingly diverse set of green plants (Viridiplantae). Although …

Plastid genomes of seed plants

RK Jansen, TA Ruhlman - Genomics of chloroplasts and mitochondria, 2012 - Springer
The field of comparative plastid genomics has burgeoned during the past decade, largely
due to the availability of rapid, less expensive genome sequencing technologies. Currently …

Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs

JB Yang, DZ Li, HT Li - Molecular ecology resources, 2014 - Wiley Online Library
Chloroplast genomes supply indispensable information that helps improve the phylogenetic
resolution and even as organelle‐scale barcodes. Next‐generation sequencing …

Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family

S Wicke, KF Müller, CW de Pamphilis, D Quandt… - The Plant …, 2013 - academic.oup.com
Nonphotosynthetic plants possess strongly reconfigured plastomes attributable to
convergent losses of photosynthesis and housekee** genes, making them excellent …

What can we do with 1000 plastid genomes?

J Tonti‐Filippini, PG Nevill, K Dixon, I Small - The Plant Journal, 2017 - Wiley Online Library
The plastid genome of plants is the smallest and most gene‐rich of the three genomes in
each cell and the one generally present in the highest copy number. As a result, obtaining …

The translational apparatus of plastids and its role in plant development

N Tiller, R Bock - Molecular plant, 2014 - cell.com
Chloroplasts (plastids) possess a genome and their own machinery to express it. Translation
in plastids occurs on bacterial-type 70S ribosomes utilizing a set of tRNAs that is entirely …

Molecular evolution of chloroplast genomes of orchid species: insights into phylogenetic relationship and adaptive evolution

WL Dong, RN Wang, NY Zhang, WB Fan… - International Journal of …, 2018 - mdpi.com
Orchidaceae is the 3rd largest family of angiosperms, an evolved young branch of
monocotyledons. This family contains a number of economically-important horticulture and …