[HTML][HTML] Network analysis methods for studying microbial communities: A mini review

MS Matchado, M Lauber, S Reitmeier… - Computational and …, 2021 - Elsevier
Microorganisms including bacteria, fungi, viruses, protists and archaea live as communities
in complex and contiguous environments. They engage in numerous inter-and intra …

Structure learning in graphical modeling

M Drton, MH Maathuis - Annual Review of Statistics and Its …, 2017 - annualreviews.org
A graphical model is a statistical model that is associated with a graph whose nodes
correspond to variables of interest. The edges of the graph reflect allowed conditional …

Data-driven graph construction and graph learning: A review

L Qiao, L Zhang, S Chen, D Shen - Neurocomputing, 2018 - Elsevier
A graph is one of important mathematical tools to describe ubiquitous relations. In the
classical graph theory and some applications, graphs are generally provided in advance, or …

Predictive overfitting in immunological applications: Pitfalls and solutions

JP Gygi, SH Kleinstein, L Guan - Human Vaccines & …, 2023 - Taylor & Francis
Overfitting describes the phenomenon where a highly predictive model on the training data
generalizes poorly to future observations. It is a common concern when applying machine …

Low rank and structured modeling of high-dimensional vector autoregressions

S Basu, X Li, G Michailidis - IEEE Transactions on Signal …, 2019 - ieeexplore.ieee.org
Network modeling of high-dimensional time series data is a key learning task due to its
widespread use in a number of application areas, including macroeconomics, finance, and …

[HTML][HTML] Open eyes and closed eyes elicit different temporal properties of brain functional networks

Y Weng, X Liu, H Hu, H Huang, S Zheng, Q Chen… - Neuroimage, 2020 - Elsevier
The eyes are our windows to the brain. There are differences in brain activity between
people who have their eyes closed (EC) and eyes open (EO). Previous studies focused on …

Gaussian graphical models with applications to omics analyses

KH Shutta, R De Vito, DM Scholtens… - Statistics in …, 2022 - Wiley Online Library
Gaussian graphical models (GGMs) provide a framework for modeling conditional
dependencies in multivariate data. In this tutorial, we provide an overview of GGM theory …

Incorporating prior information into differential network analysis using non-paranormal graphical models

XF Zhang, L Ou-Yang, H Yan - Bioinformatics, 2017 - academic.oup.com
Motivation Understanding how gene regulatory networks change under different cellular
states is important for revealing insights into network dynamics. Gaussian graphical models …

Functional connectivity network analysis with discriminative hub detection for brain disease identification

M Wang, J Huang, M Liu, D Zhang - Proceedings of the AAAI conference on …, 2019 - aaai.org
Brain network analysis can help reveal the pathological basis of neurological disorders and
facilitate automated diagnosis of brain diseases, by exploring connectivity patterns in the …

JRmGRN: joint reconstruction of multiple gene regulatory networks with common hub genes using data from multiple tissues or conditions

W Deng, K Zhang, S Liu, PX Zhao, S Xu, H Wei - Bioinformatics, 2018 - academic.oup.com
Motivation Joint reconstruction of multiple gene regulatory networks (GRNs) using gene
expression data from multiple tissues/conditions is very important for understanding …