Microbial ecology of the cryosphere: sea ice and glacial habitats
The Earth's cryosphere comprises those regions that are cold enough for water to turn into
ice. Recent findings show that the icy realms of polar oceans, glaciers and ice sheets are …
ice. Recent findings show that the icy realms of polar oceans, glaciers and ice sheets are …
Microbial community composition of the Antarctic ecosystems: Review of the bacteria, fungi, and archaea identified through an NGS-based metagenomics approach
VV Doytchinov, SG Dimov - Life, 2022 - mdpi.com
Antarctica represents a unique environment, both due to the extreme meteorological and
geological conditions that govern it and the relative isolation from human influences that …
geological conditions that govern it and the relative isolation from human influences that …
Flavonoid-attracted Aeromonas sp. from the Arabidopsis root microbiome enhances plant dehydration resistance
D He, SK Singh, L Peng, R Kaushal, JI Vílchez… - The ISME …, 2022 - academic.oup.com
Flavonoids are stress-inducible metabolites important for plant-microbe interactions. In
contrast to their well-known function in initiating rhizobia nodulation in legumes, little is …
contrast to their well-known function in initiating rhizobia nodulation in legumes, little is …
Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing
S Takahashi, J Tomita, K Nishioka, T Hisada… - PloS one, 2014 - journals.plos.org
For the analysis of microbial community structure based on 16S rDNA sequence diversity,
sensitive and robust PCR amplification of 16S rDNA is a critical step. To obtain accurate …
sensitive and robust PCR amplification of 16S rDNA is a critical step. To obtain accurate …
Comparison of two 16S rRNA primers (V3–V4 and V4–V5) for studies of arctic microbial communities
Microbial communities of the Arctic Ocean are poorly characterized in comparison to other
aquatic environments as to their horizontal, vertical, and temporal turnover. Yet, recent …
aquatic environments as to their horizontal, vertical, and temporal turnover. Yet, recent …
Intragenomic heterogeneity of 16S rRNA genes causes overestimation of prokaryotic diversity
ABSTRACT Ever since Carl Woese introduced the use of 16S rRNA genes for determining
the phylogenetic relationships of prokaryotes, this method has been regarded as the “gold …
the phylogenetic relationships of prokaryotes, this method has been regarded as the “gold …
Microbial communities can be described by metabolic structure: a general framework and application to a seasonally variable, depth-stratified microbial community …
JS Bowman, HW Ducklow - PloS one, 2015 - journals.plos.org
Taxonomic marker gene studies, such as the 16S rRNA gene, have been used to
successfully explore microbial diversity in a variety of marine, terrestrial, and host …
successfully explore microbial diversity in a variety of marine, terrestrial, and host …
Evaluation of different 16S rRNA gene V regions for exploring bacterial diversity in a eutrophic freshwater lake
J Zhang, X Ding, R Guan, C Zhu, C Xu, B Zhu… - Science of the Total …, 2018 - Elsevier
Massive partial sequencing of 16S rRNA genes has become the predominant tool used for
studying microbial ecology. However, determining which hypervariable regions and primer …
studying microbial ecology. However, determining which hypervariable regions and primer …
Microbial metabolomic responses to changes in temperature and salinity along the western Antarctic Peninsula
Seasonal cycles within the marginal ice zones in polar regions include large shifts in
temperature and salinity that strongly influence microbial abundance and physiology …
temperature and salinity that strongly influence microbial abundance and physiology …
Comparison of morphological and DNA metabarcoding analyses of diets in exploited marine fishes
Ecosystem-based management (EBM) is a framework for managing marine resources. EBM
strategies can be evaluated with ecosystem models that represent functional components of …
strategies can be evaluated with ecosystem models that represent functional components of …