Evolutionary origin of species diversity on the Qinghai–Tibet Plateau

KS Mao, Y Wang, JQ Liu - Journal of Systematics and Evolution, 2021 - Wiley Online Library
Abstract The Qinghai–Tibet Plateau (QTP) sensu lato (sl) houses an exceptional species
diversity in Asia. To develop a comprehensive understanding of species diversity in this …

Bayesian molecular clock dating of species divergences in the genomics era

M Dos Reis, PCJ Donoghue, Z Yang - Nature Reviews Genetics, 2016 - nature.com
Five decades have passed since the proposal of the molecular clock hypothesis, which
states that the rate of evolution at the molecular level is constant through time and among …

TreeTime: Maximum-likelihood phylodynamic analysis

P Sagulenko, V Puller, RA Neher - Virus evolution, 2018 - academic.oup.com
Mutations that accumulate in the genome of cells or viruses can be used to infer their
evolutionary history. In the case of rapidly evolving organisms, genomes can reveal their …

Evolutionary history of the Hymenoptera

RS Peters, L Krogmann, C Mayer, A Donath, S Gunkel… - Current biology, 2017 - cell.com
Summary Hymenoptera (sawflies, wasps, ants, and bees) are one of four mega-diverse
insect orders, comprising more than 153,000 described and possibly up to one million …

Large-scale molecular phylogeny, morphology, divergence-time estimation, and the fossil record of advanced caenophidian snakes (Squamata: Serpentes)

H Zaher, RW Murphy, JC Arredondo, R Graboski… - PloS one, 2019 - journals.plos.org
Caenophidian snakes include the file snake genus Acrochordus and advanced
colubroidean snakes that radiated mainly during the Neogene. Although caenophidian …

A super-pangenome of the North American wild grape species

N Cochetel, A Minio, A Guarracino, JF Garcia… - Genome Biology, 2023 - Springer
Background Capturing the genetic diversity of wild relatives is crucial for improving crops
because wild species are valuable sources of agronomic traits that are essential to enhance …

The geologic history of primary productivity

PW Crockford, YMB On, LM Ward, R Milo, I Halevy - Current Biology, 2023 - cell.com
The rate of primary productivity is a keystone variable in driving biogeochemical cycles
today and has been throughout Earth's past. 1 For example, it plays a critical role in …

The emergence of SARS-CoV-2 variants of concern is driven by acceleration of the substitution rate

JH Tay, AF Porter, W Wirth… - Molecular Biology and …, 2022 - academic.oup.com
The ongoing SARS-CoV-2 pandemic has seen an unprecedented amount of rapidly
generated genome data. These data have revealed the emergence of lineages with …

Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas

B Llamas, L Fehren-Schmitz, G Valverde, J Soubrier… - Science …, 2016 - science.org
The exact timing, route, and process of the initial peopling of the Americas remains uncertain
despite much research. Archaeological evidence indicates the presence of humans as far as …

A 4000-species dataset provides new insight into the evolution of ferns

W Testo, M Sundue - Molecular phylogenetics and evolution, 2016 - Elsevier
Ferns are the second-most diverse lineage of vascular plants on Earth, yet the best-sampled
time-calibrated phylogeny of the group to date includes fewer than 5% of global diversity …