[HTML][HTML] A familiar ring to it: biosynthesis of plant benzoic acids
Plant benzoic acids (BAs) are building blocks or important structural elements for numerous
primary and specialized metabolites, including plant hormones, cofactors, defense …
primary and specialized metabolites, including plant hormones, cofactors, defense …
'Democratized'genomic enzymology web tools for functional assignment
R Zallot, NO Oberg, JA Gerlt - Current opinion in chemical biology, 2018 - Elsevier
The protein databases contain an exponentially growing number of sequences as a result of
the recent increase in ease and decrease in cost of genome sequencing. The rate of data …
the recent increase in ease and decrease in cost of genome sequencing. The rate of data …
Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics
Novel metabolites distinct from canonical pathways can be identified through the integration
of three cheminformatics tools: BinVestigate, which queries the BinBase gas …
of three cheminformatics tools: BinVestigate, which queries the BinBase gas …
Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space
W Helbert, L Poulet, S Drouillard… - Proceedings of the …, 2019 - National Acad Sciences
Over the last two decades, the number of gene/protein sequences gleaned from sequencing
projects of individual genomes and environmental DNA has grown exponentially. Only a tiny …
projects of individual genomes and environmental DNA has grown exponentially. Only a tiny …
High-throughput cryo-ET structural pattern mining by unsupervised deep iterative subtomogram clustering
Cryoelectron tomography directly visualizes heterogeneous macromolecular structures in
their native and complex cellular environments. However, existing computer-assisted …
their native and complex cellular environments. However, existing computer-assisted …
A scalable strategy for high-throughput GFP tagging of endogenous human proteins
A central challenge of the postgenomic era is to comprehensively characterize the cellular
role of the∼ 20,000 proteins encoded in the human genome. To systematically study protein …
role of the∼ 20,000 proteins encoded in the human genome. To systematically study protein …
Nontargeted in vitro metabolomics for high-throughput identification of novel enzymes in Escherichia coli
Our understanding of metabolism is limited by a lack of knowledge about the functions of
many enzymes. Here, we develop a high-throughput mass spectrometry approach to …
many enzymes. Here, we develop a high-throughput mass spectrometry approach to …
Folate biosynthesis, turnover, and transport in plants
AD Hanson, JF Gregory III - Annual review of plant biology, 2011 - annualreviews.org
Folates are essential cofactors for one-carbon transfer reactions and are needed in the diets
of humans and animals. Because plants are major sources of dietary folate, plant folate …
of humans and animals. Because plants are major sources of dietary folate, plant folate …
Current knowledge and recent advances in understanding metabolism of the model cyanobacterium Synechocystis sp. PCC 6803
Cyanobacteria are key organisms in the global ecosystem, useful models for studying
metabolic and physiological processes conserved in photosynthetic organisms, and …
metabolic and physiological processes conserved in photosynthetic organisms, and …
Genomewide landscape of gene–metabolome associations in Escherichia coli
Metabolism is one of the best‐understood cellular processes whose network topology of
enzymatic reactions is determined by an organism's genome. The influence of genes on …
enzymatic reactions is determined by an organism's genome. The influence of genes on …