Plant Derived Bioactive Compounds, Their Anti-Cancer Effects and In Silico Approaches as an Alternative Target Treatment Strategy for Breast Cancer: An Updated …

V Shrihastini, P Muthuramalingam, S Adarshan… - Cancers, 2021 - mdpi.com
Simple Summary Breast cancer is one of the leading causes of death among women
worldwide. Breast cancer may be provoked due to several physical, chemical and …

From virtual patients to digital twins in immuno-oncology: lessons learned from mechanistic quantitative systems pharmacology modeling

H Wang, T Arulraj, A Ippolito, AS Popel - NPJ Digital Medicine, 2024 - nature.com
Virtual patients and digital patients/twins are two similar concepts gaining increasing
attention in health care with goals to accelerate drug development and improve patients' …

Simulations of tumor growth and response to immunotherapy by coupling a spatial agent-based model with a whole-patient quantitative systems pharmacology model

A Ruiz-Martinez, C Gong, H Wang… - PLoS computational …, 2022 - journals.plos.org
Quantitative systems pharmacology (QSP) models and spatial agent-based models (ABM)
are powerful and efficient approaches for the analysis of biological systems and for clinical …

Application of machine learning in translational medicine: current status and future opportunities

N Terranova, K Venkatakrishnan, LJ Benincosa - The AAPS Journal, 2021 - Springer
The exponential increase in our ability to harness multi-dimensional biological and clinical
data from experimental to real-world settings has transformed pharmaceutical research and …

A transcriptome-informed QSP model of metastatic triple-negative breast cancer identifies predictive biomarkers for PD-1 inhibition

T Arulraj, H Wang, LA Emens, CA Santa-Maria… - Science …, 2023 - science.org
Triple-negative breast cancer (TNBC), a highly metastatic breast cancer subtype, has limited
treatment options. While a small number of patients attain clinical benefit with single-agent …

A comprehensive review of computational cell cycle models in guiding cancer treatment strategies

C Ma, E Gurkan-Cavusoglu - NPJ Systems Biology and Applications, 2024 - nature.com
This article reviews the current knowledge and recent advancements in computational
modeling of the cell cycle. It offers a comparative analysis of various modeling paradigms …

Leveraging multi-omics data to empower quantitative systems pharmacology in immuno-oncology

T Arulraj, H Wang, A Ippolito, S Zhang… - Briefings in …, 2024 - academic.oup.com
Understanding the intricate interactions of cancer cells with the tumor microenvironment
(TME) is a pre-requisite for the optimization of immunotherapy. Mechanistic models such as …

Integration of clinical trial spatial multiomics analysis and virtual clinical trials enables immunotherapy response prediction and biomarker discovery

S Zhang, A Deshpande, BK Verma, H Wang… - Cancer …, 2024 - aacrjournals.org
Due to the lack of treatment options, there remains a need to advance new therapeutics in
hepatocellular carcinoma (HCC). The traditional approach moves from initial molecular …

Realizing the promise of project optimus: challenges and emerging opportunities for dose optimization in oncology drug development

W Gao, J Liu, B Shtylla… - CPT …, 2024 - Wiley Online Library
Project Optimus is a US Food and Drug Administration Oncology Center of Excellence
initiative aimed at reforming the dose selection and optimization paradigm in oncology drug …

Towards systems immunology of critical illness at scale: from single cell 'omics to digital twins

Y Vodovotz - Trends in immunology, 2023 - cell.com
Single-cell 'omics methodology has yielded unprecedented insights based largely on data-
centric informatics for reducing, and thus interpreting, massive datasets. In parallel …