Chromatin accessibility and the regulatory epigenome
Physical access to DNA is a highly dynamic property of chromatin that plays an essential
role in establishing and maintaining cellular identity. The organization of accessible …
role in establishing and maintaining cellular identity. The organization of accessible …
Mechanisms of enhancer action: the known and the unknown
Differential gene expression mechanisms ensure cellular differentiation and plasticity to
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …
Ever-changing landscapes: transcriptional enhancers in development and evolution
A class of cis-regulatory elements, called enhancers, play a central role in orchestrating
spatiotemporally precise gene-expression programs during development. Consequently …
spatiotemporally precise gene-expression programs during development. Consequently …
Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans
Recent years have witnessed a sea change in our understanding of transcription regulation:
whereas traditional models focused solely on the events that brought RNA polymerase II …
whereas traditional models focused solely on the events that brought RNA polymerase II …
Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
We systematically generated large-scale data sets to improve genome annotation for the
nematode Caenorhabditis elegans, a key model organism. These data sets include …
nematode Caenorhabditis elegans, a key model organism. These data sets include …
AP-1 transcription factors and the BAF complex mediate signal-dependent enhancer selection
Enhancer elements are genomic regulatory sequences that direct the selective expression
of genes so that genetically identical cells can differentiate and acquire the highly …
of genes so that genetically identical cells can differentiate and acquire the highly …
The pioneer transcription factor FoxA maintains an accessible nucleosome configuration at enhancers for tissue-specific gene activation
Nuclear DNA wraps around core histones to form nucleosomes, which restricts the binding
of transcription factors to gene regulatory sequences. Pioneer transcription factors can bind …
of transcription factors to gene regulatory sequences. Pioneer transcription factors can bind …
Chromatin accessibility profiling methods
Chromatin accessibility, or the physical access to chromatinized DNA, is a widely studied
characteristic of the eukaryotic genome. As active regulatory DNA elements are generally …
characteristic of the eukaryotic genome. As active regulatory DNA elements are generally …
[HTML][HTML] Endothelial cells are central orchestrators of cytokine amplification during influenza virus infection
JR Teijaro, KB Walsh, S Cahalan, DM Fremgen… - Cell, 2011 - cell.com
Cytokine storm during viral infection is a prospective predictor of morbidity and mortality, yet
the cellular sources remain undefined. Here, using genetic and chemical tools to probe …
the cellular sources remain undefined. Here, using genetic and chemical tools to probe …
Determinants of nucleosome organization in primary human cells
Nucleosomes are the basic packaging units of chromatin, modulating accessibility of
regulatory proteins to DNA and thus influencing eukaryotic gene regulation. Elaborate …
regulatory proteins to DNA and thus influencing eukaryotic gene regulation. Elaborate …