Genomic prediction of (mal) adaptation across current and future climatic landscapes

T Capblancq, MC Fitzpatrick, RA Bay… - Annual Review of …, 2020 - annualreviews.org
Signals of local adaptation have been found in many plants and animals, highlighting the
heterogeneity in the distribution of adaptive genetic variation throughout species ranges. In …

Genome-wide genetic marker discovery and genoty** using next-generation sequencing

JW Davey, PA Hohenlohe, PD Etter, JQ Boone… - Nature Reviews …, 2011 - nature.com
The advent of next-generation sequencing (NGS) has revolutionized genomic and
transcriptomic approaches to biology. These new sequencing tools are also valuable for the …

Stacks: an analysis tool set for population genomics

J Catchen, PA Hohenlohe, S Bassham… - Molecular …, 2013 - Wiley Online Library
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genoty** in Model and Non-Model Species

BK Peterson, JN Weber, EH Kay, HS Fisher… - PloS one, 2012 - journals.plos.org
The ability to efficiently and accurately determine genotypes is a keystone technology in
modern genetics, crucial to studies ranging from clinical diagnostics, to genotype-phenotype …

These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists

SJ O'Leary, JB Puritz, SC Willis, CM Hollenbeck… - 2018 - Wiley Online Library
Sequencing reduced‐representation libraries of restriction site‐associated DNA (RAD seq)
to identify single nucleotide polymorphisms (SNP s) is quickly becoming a standard …

From barcodes to genomes: extending the concept of DNA barcoding

E Coissac, PM Hollingsworth, S Lavergne, P Taberlet - 2016 - Wiley Online Library
DNA barcoding has had a major impact on biodiversity science. The elegant simplicity of
establishing massive scale databases for a few barcode loci is continuing to change our …

Stacks: Building and Genoty** Loci De Novo From Short-Read Sequences

JM Catchen, A Amores, P Hohenlohe… - G3: Genes| genomes …, 2011 - academic.oup.com
Advances in sequencing technology provide special opportunities for genoty** individuals
with speed and thrift, but the lack of software to automate the calling of tens of thousands of …

Genoty**‐by‐sequencing for plant breeding and genetics

JA Poland, TW Rife - The plant genome, 2012 - Wiley Online Library
Rapid advances in “next‐generation” DNA sequencing technology have brought the US
$1000 human (Homo sapiens) genome within reach while providing the raw sequencing …

Harnessing genomics for delineating conservation units

WC Funk, JK McKay, PA Hohenlohe… - Trends in ecology & …, 2012 - cell.com
Genomic data have the potential to revolutionize the delineation of conservation units (CUs)
by allowing the detection of adaptive genetic variation, which is otherwise difficult for rare …

Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation

SP Flanagan, BR Forester, EK Latch… - Evolutionary …, 2018 - Wiley Online Library
Identifying and monitoring locally adaptive genetic variation can have direct utility for
conserving species at risk, especially when management may include actions such as …