An overview of biomedical entity linking throughout the years
Abstract Biomedical Entity Linking (BEL) is the task of map** of spans of text within
biomedical documents to normalized, unique identifiers within an ontology. This is an …
biomedical documents to normalized, unique identifiers within an ontology. This is an …
HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools
Motivation With the exponential growth of the life sciences literature, biomedical text mining
(BTM) has become an essential technology for accelerating the extraction of insights from …
(BTM) has become an essential technology for accelerating the extraction of insights from …
[HTML][HTML] NILINKER: attention-based approach to NIL entity linking
The existence of unlinkable (NIL) entities is a major hurdle affecting the performance of
Named Entity Linking approaches, and, consequently, the performance of downstream …
Named Entity Linking approaches, and, consequently, the performance of downstream …
An automatic generation of heterogeneous knowledge graph for global disease support: A demonstration of a cancer use case
Semantic data integration provides the ability to interrelate and analyze information from
multiple heterogeneous resources. With the growing complexity of medical ontologies and …
multiple heterogeneous resources. With the growing complexity of medical ontologies and …
HunFlair2 in a cross-corpus evaluation of named entity recognition and normalization tools
With the exponential growth of the life science literature, biomedical text mining (BTM) has
become an essential technology for accelerating the extraction of insights from publications …
become an essential technology for accelerating the extraction of insights from publications …
Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics
Background Identifying chemical mentions within the Alzheimer's and dementia literature
can provide a powerful tool to further therapeutic research. Leveraging the Chemical Entities …
can provide a powerful tool to further therapeutic research. Leveraging the Chemical Entities …
Hybrid semantic recommender system for chemical compounds in large-scale datasets
The large, and increasing, number of chemical compounds poses challenges to the
exploration of such datasets. In this work, we propose the usage of recommender systems to …
exploration of such datasets. In this work, we propose the usage of recommender systems to …
Hybrid X-Linker: Automated Data Generation and Extreme Multi-label Ranking for Biomedical Entity Linking
State-of-the-art deep learning entity linking methods rely on extensive human-labelled data,
which is costly to acquire. Current datasets are limited in size, leading to inadequate …
which is costly to acquire. Current datasets are limited in size, leading to inadequate …
Multilingual bi‐encoder models for biomedical entity linking
Natural language processing (NLP) is a field of study that focuses on data analysis on texts
with certain methods. NLP includes tasks such as sentiment analysis, spam detection, entity …
with certain methods. NLP includes tasks such as sentiment analysis, spam detection, entity …
Creating Recommender Systems Datasets in Scientific Fields
Recommender systems (RS) have been successfully explored in a vast number of domains,
eg movies and tv shows, music, or e-commerce. In these domains we have a large number …
eg movies and tv shows, music, or e-commerce. In these domains we have a large number …