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Using machine learning approaches for multi-omics data analysis: A review
With the development of modern high-throughput omic measurement platforms, it has
become essential for biomedical studies to undertake an integrative (combined) approach to …
become essential for biomedical studies to undertake an integrative (combined) approach to …
Protein‐protein interaction detection: methods and analysis
Protein‐protein interaction plays key role in predicting the protein function of target protein
and drug ability of molecules. The majority of genes and proteins realize resulting …
and drug ability of molecules. The majority of genes and proteins realize resulting …
[HTML][HTML] Information fusion as an integrative cross-cutting enabler to achieve robust, explainable, and trustworthy medical artificial intelligence
Medical artificial intelligence (AI) systems have been remarkably successful, even
outperforming human performance at certain tasks. There is no doubt that AI is important to …
outperforming human performance at certain tasks. There is no doubt that AI is important to …
[HTML][HTML] A census of human soluble protein complexes
Cellular processes often depend on stable physical associations between proteins. Despite
recent progress, knowledge of the composition of human protein complexes remains limited …
recent progress, knowledge of the composition of human protein complexes remains limited …
UbiBrowser 2.0: a comprehensive resource for proteome-wide known and predicted ubiquitin ligase/deubiquitinase–substrate interactions in eukaryotic species
X Wang, Y Li, M He, X Kong, P Jiang, X Liu… - Nucleic acids …, 2022 - academic.oup.com
As an important post-translational modification, ubiquitination mediates∼ 80% of protein
degradation in eukaryotes. The degree of protein ubiquitination is tightly determined by the …
degradation in eukaryotes. The degree of protein ubiquitination is tightly determined by the …
IID 2018 update: context-specific physical protein–protein interactions in human, model organisms and domesticated species
Knowing the set of physical protein–protein interactions (PPIs) that occur in a particular
context—a tissue, disease, or other condition—can provide valuable insights into key …
context—a tissue, disease, or other condition—can provide valuable insights into key …
Integration of biological networks and gene expression data using Cytoscape
Cytoscape is a free software package for visualizing, modeling and analyzing molecular and
genetic interaction networks. This protocol explains how to use Cytoscape to analyze the …
genetic interaction networks. This protocol explains how to use Cytoscape to analyze the …
Fundamentals of protein interaction network map**
Studying protein interaction networks of all proteins in an organism (“interactomes”) remains
one of the major challenges in modern biomedicine. Such information is crucial to …
one of the major challenges in modern biomedicine. Such information is crucial to …
Prioritizing candidate disease genes by network-based boosting of genome-wide association data
Network “guilt by association”(GBA) is a proven approach for identifying novel disease
genes based on the observation that similar mutational phenotypes arise from functionally …
genes based on the observation that similar mutational phenotypes arise from functionally …
Yeast two-hybrid, a powerful tool for systems biology
A Brückner, C Polge, N Lentze, D Auerbach… - International journal of …, 2009 - mdpi.com
A key property of complex biological systems is the presence of interaction networks formed
by its different components, primarily proteins. These are crucial for all levels of cellular …
by its different components, primarily proteins. These are crucial for all levels of cellular …