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A review of computational tools for design and reconstruction of metabolic pathways
Metabolic pathways reflect an organism's chemical repertoire and hence their elucidation
and design have been a primary goal in metabolic engineering. Various computational …
and design have been a primary goal in metabolic engineering. Various computational …
High efficient production of plant flavonoids by microbial cell factories: Challenges and opportunities
J Sun, W Sun, G Zhang, B Lv, C Li - Metabolic engineering, 2022 - Elsevier
Plant flavonoids are secondary metabolites containing a benzo-γ-pyrone structure, which
are widely present in plants and have a variety of physiological and pharmacological …
are widely present in plants and have a variety of physiological and pharmacological …
Discovery of toxin-degrading enzymes with positive unlabeled deep learning
Identifying functional enzymes for the catalysis of specific biochemical reactions is a major
bottleneck in the de novo design of biosynthesis and biodegradation pathways …
bottleneck in the de novo design of biosynthesis and biodegradation pathways …
Enzyme annotation for orphan and novel reactions using knowledge of substrate reactive sites
Thousands of biochemical reactions with characterized activities are “orphan,” meaning they
cannot be assigned to a specific enzyme, leaving gaps in metabolic pathways. Novel …
cannot be assigned to a specific enzyme, leaving gaps in metabolic pathways. Novel …
Data-driven prediction of molecular biotransformations in food fermentation
Fermentation products, together with food components, determine the sense, nutrition, and
safety of fermented foods. Traditional methods of fermentation product identification are time …
safety of fermented foods. Traditional methods of fermentation product identification are time …
novoPathFinder: a webserver of designing novel-pathway with integrating GEM-model
To increase the number of value-added chemicals that can be produced by metabolic
engineering and synthetic biology, constructing metabolic space with novel …
engineering and synthetic biology, constructing metabolic space with novel …
Methylglucosylation of aromatic amino and phenolic moieties of drug-like biosynthons by combinatorial biosynthesis
L **e, L Zhang, C Wang, X Wang, Y Xu, H Yu… - Proceedings of the …, 2018 - pnas.org
Glycosylation is a prominent strategy to optimize the pharmacokinetic and
pharmacodynamic properties of drug-like small-molecule scaffolds by modulating their …
pharmacodynamic properties of drug-like small-molecule scaffolds by modulating their …
A systems approach to predict oncometabolites via context-specific genome-scale metabolic networks
Altered metabolism in cancer cells has been viewed as a passive response required for a
malignant transformation. However, this view has changed through the recently described …
malignant transformation. However, this view has changed through the recently described …
MycotoxinDB: A data-driven platform for investigating masked forms of mycotoxins
J Ji, D Zhang, J Ye, Y Zheng, J Cui… - Journal of Agricultural …, 2023 - ACS Publications
Mycotoxins are likely to be converted into masked forms when subjected to plant metabolism
or food processing. These masked forms of mycotoxins together with their prototypes may …
or food processing. These masked forms of mycotoxins together with their prototypes may …
Bottom-up synthetic biology approach for improving the efficiency of menaquinone-7 synthesis in Bacillus subtilis
X Ding, Z Zheng, G Zhao, L Wang, H Wang… - Microbial Cell …, 2022 - Springer
Abstract Background Menaquinone-7 (MK-7), which is associated with complex and tightly
regulated pathways and redox imbalances, is produced at low titres in Bacillus subtilis …
regulated pathways and redox imbalances, is produced at low titres in Bacillus subtilis …