Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

A review of the trade in orchids and its implications for conservation

A Hinsley, HJ De Boer, MF Fay, SW Gale… - Botanical Journal of …, 2018 - academic.oup.com
Orchids are one of the largest plant families and are commercially traded for a variety of
purposes, including as ornamental plants, medicinal products and food. These markets …

[HTML][HTML] A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project

AD Twyford, J Beasley, I Barnes, H Allen… - Wellcome Open …, 2024 - pmc.ncbi.nlm.nih.gov
Biodiversity genomics research requires reliable organismal identification, which can be
difficult based on morphology alone. DNA-based identification using DNA barcoding can …

A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering

MG Johnson, L Pokorny, S Dodsworth… - Systematic …, 2019 - academic.oup.com
Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …

The expanding role of DNA barcodes: Indispensable tools for ecology, evolution, and conservation

MR Gostel, WJ Kress - Diversity, 2022 - mdpi.com
DNA barcoding has transformed the fields of ecology, evolution, and conservation by
providing a rapid and effective tool for species identification. The growth of DNA barcodes as …

Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis

TM Porter, M Hajibabaei - Molecular ecology, 2018 - Wiley Online Library
The purpose of this review is to present the most common and emerging DNA‐based
methods used to generate data for biodiversity and biomonitoring studies. As environmental …

Plant DNA barcodes: Applications today and in the future

WJ Kress - Journal of systematics and evolution, 2017 - Wiley Online Library
DNA barcodes have provided a new biological tool for organismal biologists to increase
their understanding of the natural world. Over the last decade four plant DNA barcode …

Genome skimming herbarium specimens for DNA barcoding and phylogenomics

CX Zeng, PM Hollingsworth, J Yang, ZS He, ZR Zhang… - Plant Methods, 2018 - Springer
Background The world's herbaria contain millions of specimens, collected and named by
thousands of researchers, over hundreds of years. However, this treasure has remained …

[HTML][HTML] Factors affecting targeted sequencing of 353 nuclear genes from herbarium specimens spanning the diversity of angiosperms

GE Brewer, JJ Clarkson, O Maurin, AR Zuntini… - Frontiers in plant …, 2019 - frontiersin.org
The world's herbaria collectively house millions of diverse plant specimens, including
endangered or extinct species and type specimens. Unlocking genetic data from the …

What can we do with 1000 plastid genomes?

J Tonti‐Filippini, PG Nevill, K Dixon, I Small - The Plant Journal, 2017 - Wiley Online Library
The plastid genome of plants is the smallest and most gene‐rich of the three genomes in
each cell and the one generally present in the highest copy number. As a result, obtaining …