NORMAN guidance on suspect and non-target screening in environmental monitoring

J Hollender, EL Schymanski, L Ahrens… - Environmental Sciences …, 2023 - Springer
Increasing production and use of chemicals and awareness of their impact on ecosystems
and humans has led to large interest for broadening the knowledge on the chemical status …

The critical role that spectral libraries play in capturing the metabolomics community knowledge

W Bittremieux, M Wang, PC Dorrestein - Metabolomics, 2022 - Springer
Background Spectral library searching is currently the most common approach for
compound annotation in untargeted metabolomics. Spectral libraries applicable to liquid …

Recent advances in mass spectrometry-based computational metabolomics

TMD Ebbels, JJJ van der Hooft, H Chatelaine… - Current opinion in …, 2023 - Elsevier
The computational metabolomics field brings together computer scientists, bioinformaticians,
chemists, clinicians, and biologists to maximize the impact of metabolomics across a wide …

Progress and challenges in exploring aquatic microbial communities using non-targeted metabolomics

M Thukral, AE Allen, D Petras - The ISME Journal, 2023 - academic.oup.com
Advances in bioanalytical technologies are constantly expanding our insights into complex
ecosystems. Here, we highlight strategies and applications that make use of non-targeted …

Portosystemic shunt placement reveals blood signatures for the development of hepatic encephalopathy through mass spectrometry

AC Dantas Machado, SF Ramos, JM Gauglitz… - Nature …, 2023 - nature.com
Elective transjugular intrahepatic portosystemic shunt (TIPS) placement can worsen
cognitive dysfunction in hepatic encephalopathy (HE) patients due to toxins, including …

MS2Query: reliable and scalable MS2 mass spectra-based analogue search

NF de Jonge, JJR Louwen, E Chekmeneva… - Nature …, 2023 - nature.com
Metabolomics-driven discoveries of biological samples remain hampered by the grand
challenge of metabolite annotation and identification. Only few metabolites have an …

Comparison of cosine, modified cosine, and neutral loss based spectrum alignment for discovery of structurally related molecules

W Bittremieux, R Schmid, F Huber… - Journal of the …, 2022 - ACS Publications
Spectrum alignment of tandem mass spectrometry (MS/MS) data using the modified cosine
similarity and subsequent visualization as molecular networks have been demonstrated to …

The changing metabolic landscape of bile acids–keys to metabolism and immune regulation

I Mohanty, C Allaband, H Mannochio-Russo… - Nature reviews …, 2024 - nature.com
Bile acids regulate nutrient absorption and mitochondrial function, they establish and
maintain gut microbial community composition and mediate inflammation, and they serve as …

Effects of a ketogenic and low‐fat diet on the human metabolome, microbiome, and foodome in adults at risk for Alzheimer's disease

AH Dilmore, C Martino, BJ Neth, KA West… - Alzheimer's & …, 2023 - Wiley Online Library
INTRODUCTION The ketogenic diet (KD) is an intriguing therapeutic candidate for
Alzheimer's disease (AD) given its protective effects against metabolic dysregulation and …

Evaluation of data-dependent MS/MS acquisition parameters for non-targeted metabolomics and molecular networking of environmental samples: Focus on the Q …

P Stincone, AK Pakkir Shah, R Schmid… - Analytical …, 2023 - ACS Publications
Non-targeted liquid chromatography–tandem mass spectrometry (LC–MS/MS) is a widely
used tool for metabolomics analysis, enabling the detection and annotation of small …