Complexity of the alternative splicing landscape in plants

ASN Reddy, Y Marquez, M Kalyna, A Barta - The Plant Cell, 2013 - academic.oup.com
Alternative splicing (AS) of precursor mRNAs (pre-mRNAs) from multiexon genes allows
organisms to increase their coding potential and regulate gene expression through multiple …

Alternative splicing and protein diversity: plants versus animals

S Chaudhary, W Khokhar, I Jabre, ASN Reddy… - Frontiers in plant …, 2019 - frontiersin.org
Plants, unlike animals, exhibit a very high degree of plasticity in their growth and
development and employ diverse strategies to cope with the variations during diurnal cycles …

Global impact of unproductive splicing on human gene expression

B Fair, CF Buen Abad Najar, J Zhao, S Lozano… - Nature Genetics, 2024 - nature.com
Alternative splicing (AS) in human genes is widely viewed as a mechanism for enhancing
proteomic diversity. AS can also impact gene expression levels without increasing protein …

Araport11: a complete reannotation of the Arabidopsis thaliana reference genome

CY Cheng, V Krishnakumar, AP Chan… - The Plant …, 2017 - Wiley Online Library
The flowering plant Arabidopsis thaliana is a dicot model organism for research in many
aspects of plant biology. A comprehensive annotation of its genome paves the way for …

Alternative splicing landscapes in Arabidopsis thaliana across tissues and stress conditions highlight major functional differences with animals

G Martín, Y Márquez, F Mantica, P Duque, M Irimia - Genome biology, 2021 - Springer
Background Alternative splicing (AS) is a widespread regulatory mechanism in multicellular
organisms. Numerous transcriptomic and single-gene studies in plants have investigated AS …

Alternative splicing of TaHSFA6e modulates heat shock protein–mediated translational regulation in response to heat stress in wheat

J Wen, Z Qin, L Sun, Y Zhang, D Wang, H Peng… - New …, 2023 - Wiley Online Library
Heat stress greatly threatens crop production. Plants have evolved multiple adaptive
mechanisms, including alternative splicing, that allow them to withstand this stress …

High-resolution expression map of the Arabidopsis root reveals alternative splicing and lincRNA regulation

S Li, M Yamada, X Han, U Ohler, PN Benfey - Developmental cell, 2016 - cell.com
The extent to which alternative splicing and long intergenic noncoding RNAs (lincRNAs)
contribute to the specialized functions of cells within an organ is poorly understood. We …

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

R Zhang, CPG Calixto, Y Marquez… - Nucleic acids …, 2017 - academic.oup.com
Alternative splicing generates multiple transcript and protein isoforms from the same gene
and thus is important in gene expression regulation. To date, RNA-sequencing (RNA-seq) is …

Polysomes, stress granules, and processing bodies: a dynamic triumvirate controlling cytoplasmic mRNA fate and function

T Chantarachot, J Bailey-Serres - Plant physiology, 2018 - academic.oup.com
Polysomes, Stress Granules, and Processing Bodies: A Dynamic Triumvirate Controlling
Cytoplasmic mRNA Fate and Function | Plant Physiology | Oxford Academic Skip to Main …

Global dissection of alternative splicing in paleopolyploid soybean

Y Shen, Z Zhou, Z Wang, W Li, C Fang, M Wu… - The Plant …, 2014 - academic.oup.com
Alternative splicing (AS) is common in higher eukaryotes and plays an important role in
gene posttranscriptional regulation. It has been suggested that AS varies dramatically …