Small-molecule discovery through DNA-encoded libraries

AA Peterson, DR Liu - Nature Reviews Drug Discovery, 2023 - nature.com
The development of bioactive small molecules as probes or drug candidates requires
discovery platforms that enable access to chemical diversity and can quickly reveal new …

Carbonic anhydrase as a model for biophysical and physical-organic studies of proteins and protein− ligand binding

VM Krishnamurthy, GK Kaufman, AR Urbach… - Chemical …, 2008 - ACS Publications
Carbonic anhydrase (CA, EC 4.2. 1.1) is a protein that is especially well-suited to serve as a
model in many types of studies in biophysics, bioanalysis, the physical-organic chemistry of …

Phage-encoded combinatorial chemical libraries based on bicyclic peptides

C Heinis, T Rutherford, S Freund, G Winter - Nature chemical biology, 2009 - nature.com
Here we describe a phage strategy for the selection of ligands based on bicyclic or linear
peptides attached covalently to an organic core. We designed peptide repertoires with three …

DNA-templated organic synthesis and selection of a library of macrocycles

ZJ Gartner, BN Tse, R Grubina, JB Doyon, TM Snyder… - Science, 2004 - science.org
The translation of nucleic acid libraries into corresponding synthetic compounds would
enable selection and amplification principles to be applied to man-made molecules. We …

Second-generation DNA-templated macrocycle libraries for the discovery of bioactive small molecules

DL Usanov, AI Chan, JP Maianti, DR Liu - Nature chemistry, 2018 - nature.com
DNA-encoded libraries have emerged as a widely used resource for the discovery of
bioactive small molecules, and offer substantial advantages compared with conventional …

DNA‐templated organic synthesis: nature's strategy for controlling chemical reactivity applied to synthetic molecules

X Li, DR Liu - Angewandte Chemie International Edition, 2004 - Wiley Online Library
In contrast to the approach commonly taken by chemists, nature controls chemical reactivity
by modulating the effective molarity of highly dilute reactants through macromolecule …

Encoded self-assembling chemical libraries

S Melkko, J Scheuermann, CE Dumelin, D Neri - Nature biotechnology, 2004 - nature.com
The isolation of molecules capable of high-affinity and specific binding to biological targets
is a central problem in chemistry, biology and pharmaceutical sciences. Here we describe …

Small-molecule discovery from DNA-encoded chemical libraries

RE Kleiner, CE Dumelin, DR Liu - Chemical Society Reviews, 2011 - pubs.rsc.org
Researchers seeking to improve the efficiency and cost effectiveness of the bioactive small-
molecule discovery process have recently embraced selection-based approaches, which in …

Detecting RNA and DNA with templated chemical reactions

AP Silverman, ET Kool - Chemical reviews, 2006 - ACS Publications
Sensing nucleic acid sequences is critical in modern-day biology and medicine, and is likely
to continue to increase in importance over the next 10r20 years. The current uses for …

Terminal protection of small-molecule-linked DNA for sensitive electrochemical detection of protein binding via selective carbon nanotube assembly

Z Wu, Z Zhen, JH Jiang, GL Shen… - Journal of the American …, 2009 - ACS Publications
Small-molecule-linked DNA has emerged as a versatile tool for the interaction assay
between small organic molecules and their protein receptors. We report herein the proof-of …