[HTML][HTML] Challenges and perspectives of metaproteomic data analysis
In nature microorganisms live in complex microbial communities. Comprehensive taxonomic
and functional knowledge about microbial communities supports medical and technical …
and functional knowledge about microbial communities supports medical and technical …
Challenges and approaches in microbiome research: from fundamental to applied
We face major agricultural challenges that remain a threat for global food security. Soil
microbes harbor enormous potentials to provide sustainable and economically favorable …
microbes harbor enormous potentials to provide sustainable and economically favorable …
Assessing species biomass contributions in microbial communities via metaproteomics
Microbial community structure can be analyzed by quantifying cell numbers or by quantifying
biomass for individual populations. Methods for quantifying cell numbers are already …
biomass for individual populations. Methods for quantifying cell numbers are already …
Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics
The phylogenetic composition of the heterotrophic microbial community is depth stratified in
the oceanic water column down to abyssopelagic layers. In the layers below the euphotic …
the oceanic water column down to abyssopelagic layers. In the layers below the euphotic …
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows
Metaproteomics has matured into a powerful tool to assess functional interactions in
microbial communities. While many metaproteomic workflows are available, the impact of …
microbial communities. While many metaproteomic workflows are available, the impact of …
[HTML][HTML] Considerations for constructing a protein sequence database for metaproteomics
Mass spectrometry-based metaproteomics has emerged as a prominent technique for
interrogating the functions of specific organisms in microbial communities, in addition to total …
interrogating the functions of specific organisms in microbial communities, in addition to total …
Determination of the protein content of complex samples by aromatic amino acid analysis, liquid chromatography-UV absorbance, and colorimetry
Fast and accurate determination of the protein content of a sample is an important and non-
trivial task of many biochemical, biomedical, food chemical, pharmaceutical, and …
trivial task of many biochemical, biomedical, food chemical, pharmaceutical, and …
MetaLab: an automated pipeline for metaproteomic data analysis
Background Research involving microbial ecosystems has drawn increasing attention in
recent years. Studying microbe-microbe, host-microbe, and environment-microbe …
recent years. Studying microbe-microbe, host-microbe, and environment-microbe …
Methodological advances to study contaminant biotransformation: new prospects for understanding and reducing environmental persistence?
Complex microbial communities in environmental systems play a key role in the
detoxification of chemical contaminants by transforming them into less active metabolites or …
detoxification of chemical contaminants by transforming them into less active metabolites or …
A complete and flexible workflow for metaproteomics data analysis based on MetaProteomeAnalyzer and Prophane
H Schiebenhoefer, K Schallert, BY Renard, K Trappe… - Nature protocols, 2020 - nature.com
Metaproteomics, the study of the collective protein composition of multi-organism systems,
provides deep insights into the biodiversity of microbial communities and the complex …
provides deep insights into the biodiversity of microbial communities and the complex …