A comprehensive electron wavefunction analysis toolbox for chemists, Multiwfn

T Lu - The Journal of Chemical Physics, 2024 - pubs.aip.org
Analysis of electron wavefunction is a key component of quantum chemistry investigations
and is indispensable for the practical research of many chemical problems. After more than …

The energetic origins of pi–pi contacts in proteins

K Carter-Fenk, M Liu, L Pujal… - Journal of the …, 2023 - ACS Publications
Accurate potential energy models of proteins must describe the many different types of
noncovalent interactions that contribute to a protein's stability and structure. Pi–pi contacts …

n2v: A density‐to‐potential inversion suite. A sandbox for creating, testing, and benchmarking density functional theory inversion methods

Y Shi, VH Chávez, A Wasserman - Wiley Interdisciplinary …, 2022 - Wiley Online Library
From the most fundamental to the most practical side of density functional theory (DFT),
Kohn–Sham inversions (iKS) can contribute to the development of functional approximations …

[HTML][HTML] Python in chemistry: physicochemical tools

FV Ryzhkov, YE Ryzhkova, MN Elinson - Processes, 2023 - mdpi.com
The popularity of the Python programming language in chemistry is growing every year.
Python provides versatility, simplicity, and a rich ecosystem of libraries, making it the …

The tale of HORTON: Lessons learned in a decade of scientific software development

M Chan, T Verstraelen, A Tehrani, M Richer… - The Journal of …, 2024 - pubs.aip.org
HORTON is a free and open-source electronic-structure package written primarily in Python
3 with some underlying C++ components. While HORTON's development has been mainly …

Variational Hirshfeld partitioning: General framework and the additive variational Hirshfeld partitioning method

F Heidar-Zadeh, C Castillo-Orellana… - Journal of Chemical …, 2024 - ACS Publications
We introduce the general mathematical framework of variational Hirshfeld partitioning,
wherein the best possible approximation to a molecule's electron density is obtained by …

Grid: A Python library for molecular integration, interpolation, differentiation, and more

A Tehrani, XD Yang, M Martínez-González… - The Journal of …, 2024 - pubs.aip.org
Grid is a free and open-source Python library for constructing numerical grids to integrate,
interpolate, and differentiate functions (eg, molecular properties), with a strong emphasis on …

GBasis: A Python library for evaluating functions, functionals, and integrals expressed with Gaussian basis functions

TD Kim, L Pujal, M Richer, M van Zyl… - The Journal of …, 2024 - pubs.aip.org
GBasis is a free and open-source Python library for molecular property computations based
on Gaussian basis functions in quantum chemistry. Specifically, GBasis allows one to …

Procrustes: A python library to find transformations that maximize the similarity between matrices

F Meng, M Richer, A Tehrani, J La, TD Kim… - Computer Physics …, 2022 - Elsevier
We have developed Procrustes, a free, open-source, cross-platform, and user-friendly
Python library implementing a wide-range of algorithmic solutions to Procrustes problems …

TREXIO: A file format and library for quantum chemistry

E Posenitskiy, VG Chilkuri, A Ammar… - The Journal of …, 2023 - pubs.aip.org
TREXIO is an open-source file format and library developed for the storage and
manipulation of data produced by quantum chemistry calculations. It is designed with the …