StackPDB: predicting DNA-binding proteins based on XGB-RFE feature optimization and stacked ensemble classifier

Q Zhang, P Liu, X Wang, Y Zhang, Y Han, B Yu - Applied Soft Computing, 2021 - Elsevier
DNA-binding proteins (DBPs) not only play an important role in all aspects of genetic
activities such as DNA replication, recombination, repair, and modification but also are used …

Identification of DNA-binding proteins by combining auto-cross covariance transformation and ensemble learning

B Liu, S Wang, Q Dong, S Li… - IEEE transactions on …, 2016 - ieeexplore.ieee.org
DNA-binding proteins play a pivotal role in various intra-and extra-cellular activities ranging
from DNA replication to gene expression control. With the rapid development of next …

Using Chou's general PseAAC to analyze the evolutionary relationship of receptor associated proteins (RAP) with various folding patterns of protein domains

SM Krishnan - Journal of theoretical biology, 2018 - Elsevier
The receptor-associated protein (RAP) is an inhibitor of endocytic receptors that belong to
the lipoprotein receptor gene family. In this study, a computational approach was tried to find …

Identification of DNA-binding proteins by auto-cross covariance transformation

Q Dong, S Wang, K Wang, X Liu… - 2015 IEEE International …, 2015 - ieeexplore.ieee.org
DNA-binding proteins play a pivotal role in various intra-and extra-cellular activities ranging
from DNA replication to gene expression control. With the rapid development of next …

Enabling full‐length evolutionary profiles based deep convolutional neural network for predicting DNA‐binding proteins from sequence

S Chauhan, S Ahmad - Proteins: Structure, Function, and …, 2020 - Wiley Online Library
Sequence based DNA‐binding protein (DBP) prediction is a widely studied biological
problem. Sliding windows on position specific substitution matrices (PSSMs) rows predict …

UMAP-DBP: an improved DNA-binding proteins prediction method based on uniform manifold approximation and projection

J Wang, S Zhang, H Qiao, J Wang - The Protein Journal, 2021 - Springer
DNA-binding proteins play a vital role in cellular processes. It is an extremely urgent to
develop a high-throughput method for efficiently identifying DNA-binding proteins. According …

DNA-binding protein prediction using plant specific support vector machines: validation and application of a new genome annotation tool

GB Motion, AJM Howden, E Huitema… - Nucleic acids …, 2015 - academic.oup.com
There are currently 151 plants with draft genomes available but levels of functional
annotation for putative protein products are low. Therefore, accurate computational …

[HTML][HTML] Small-angle scattering and multifractal analysis of DNA sequences

EM Anitas - International Journal of Molecular Sciences, 2020 - mdpi.com
The arrangement of A, C, G and T nucleotides in large DNA sequences of many prokaryotic
and eukaryotic cells exhibit long-range correlations with fractal properties. Chaos game …

PSSP-RFE: accurate prediction of protein structural class by recursive feature extraction from PSI-BLAST profile, physical-chemical property and functional …

L Li, X Cui, S Yu, Y Zhang, Z Luo, H Yang, Y Zhou… - PLoS …, 2014 - journals.plos.org
Protein structure prediction is critical to functional annotation of the massively accumulated
biological sequences, which prompts an imperative need for the development of high …

A kernelized non-parametric classifier based on feature ranking in anisotropic Gaussian kernel

R Sheikhpour, MA Sarram, MAZ Chahooki… - Neurocomputing, 2017 - Elsevier
Non-parametric methods make no assumptions about the form of data distribution and
estimate it directly from the data. Kernel density estimation is a non-parametric method …