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Unique aspects of plant nonsense-mediated mRNA decay
O Shaul - Trends in plant science, 2015 - cell.com
Nonsense-mediated mRNA Decay (NMD) is a eukaryotic quality-control mechanism that
governs the stability of both aberrant and normal transcripts. Although plant and mammalian …
governs the stability of both aberrant and normal transcripts. Although plant and mammalian …
Comparison of alternative splicing junction detection tools using RNASeq data
Background: Alternative splicing (AS) is a posttranscriptional process that produces different
transcripts from the same gene and is important to produce diverse protein products in …
transcripts from the same gene and is important to produce diverse protein products in …
Three rice NAC transcription factors heteromerize and are associated with seed size
NACs are plant-specific transcription factors (TFs) involved in multiple aspects of
development and stress. In rice, three NAC TF encoding genes, namely ONAC020 …
development and stress. In rice, three NAC TF encoding genes, namely ONAC020 …
Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes
Background Most eukaryotic genes comprise exons and introns thus requiring the precise
removal of introns from pre-mRNAs to enable protein biosynthesis. U2 and U12 …
removal of introns from pre-mRNAs to enable protein biosynthesis. U2 and U12 …
Animal, fungi, and plant genome sequences harbor different non-canonical splice sites
K Frey, B Pucker - Cells, 2020 - mdpi.com
Most protein-encoding genes in eukaryotes contain introns, which are interwoven with
exons. Introns need to be removed from initial transcripts in order to generate the final …
exons. Introns need to be removed from initial transcripts in order to generate the final …
Transcriptome and WGCNA reveal hub genes in sugarcane tiller seedlings in response to drought stress
Y Tang, J Li, Q Song, Q Cheng, Q Tan, Q Zhou… - Scientific Reports, 2023 - nature.com
Drought stress can severely affect sugarcane growth and yield. The objective of this
research was to identify candidate genes in sugarcane tillering seedlings in response to …
research was to identify candidate genes in sugarcane tillering seedlings in response to …
DEAD-box RNA helicase 42 plays a critical role in pre-mRNA splicing under cold stress
Low temperature is an important environmental stress that adversely affects rice (Oryza
sativa) growth and productivity. Splicing of pre-mRNA is a crucial posttranscriptional …
sativa) growth and productivity. Splicing of pre-mRNA is a crucial posttranscriptional …
GreenPhos, a universal method for in-depth measurement of plant phosphoproteomes with high quantitative reproducibility
X Duan, Y Zhang, X Huang, X Ma, H Gao, Y Wang… - Molecular Plant, 2024 - cell.com
Protein phosphorylation regulates a variety of important cellular and physiological
processes in plants. In-depth profiling of plant phosphoproteomes has been more …
processes in plants. In-depth profiling of plant phosphoproteomes has been more …
Deciphering the role of alternative splicing as modulators of defense response in the MYMIV–Vigna mungo pathosystem
Alternative splicing (AS) is a crucial regulatory mechanism that impacts transcriptome and
proteome complexity under stressful situations. Although its role in abiotic stresses is …
proteome complexity under stressful situations. Although its role in abiotic stresses is …
Identification of circular RNAs hosted by the RPGR ORF15 genomic locus
T Appelbaum, GD Aguirre, WA Beltran - RNA biology, 2023 - Taylor & Francis
Mutations in the retina-specific isoform of the gene encoding retinitis pigmentosa GTPase
regulator (RPGRorf15) cause X-linked retinitis pigmentosa, a severe and early onset …
regulator (RPGRorf15) cause X-linked retinitis pigmentosa, a severe and early onset …