Gut microbiome stability and resilience: elucidating the response to perturbations in order to modulate gut health

M Fassarella, EE Blaak, J Penders, A Nauta, H Smidt… - Gut, 2021 - gut.bmj.com
The human gut microbiome is a complex ecosystem, densely colonised by thousands of
microbial species. It varies among individuals and depends on host genotype and …

Parabacteroides distasonis: intriguing aerotolerant gut anaerobe with emerging antimicrobial resistance and pathogenic and probiotic roles in human health

JC Ezeji, DK Sarikonda, A Hopperton, HL Erkkila… - Gut …, 2021 - Taylor & Francis
Parabacteroides distasonis is the type strain for the genus Parabacteroides, a group of gram-
negative anaerobic bacteria that commonly colonize the gastrointestinal tract of numerous …

A unified catalog of 204,938 reference genomes from the human gut microbiome

A Almeida, S Nayfach, M Boland, F Strozzi… - Nature …, 2021 - nature.com
Comprehensive, high-quality reference genomes are required for functional characterization
and taxonomic assignment of the human gut microbiota. We present the Unified Human …

Gut microbiota carcinogen metabolism causes distal tissue tumours

B Roje, B Zhang, E Mastrorilli, A Kovačić, L Sušak… - Nature, 2024 - nature.com
Exposure to environmental pollutants and human microbiome composition are important
predisposition factors for tumour development,. Similar to drug molecules, pollutants are …

Fungi as mediators linking organisms and ecosystems

M Bahram, T Netherway - FEMS Microbiology Reviews, 2022 - academic.oup.com
Fungi form a major and diverse component of most ecosystems on Earth. They are both
micro and macroorganisms with high and varying functional diversity as well as great …

Population-level impacts of antibiotic usage on the human gut microbiome

K Lee, S Raguideau, K Sirén, F Asnicar… - Nature …, 2023 - nature.com
The widespread usage of antimicrobials has driven the evolution of resistance in pathogenic
microbes, both increased prevalence of antimicrobial resistance genes (ARGs) and their …

Demystifying the manipulation of host immunity, metabolism, and extraintestinal tumors by the gut microbiome

Z Zhang, H Tang, P Chen, H **e, Y Tao - Signal transduction and …, 2019 - nature.com
The trillions of microorganisms in the gut microbiome have attracted much attention recently
owing to their sophisticated and widespread impacts on numerous aspects of host …

[HTML][HTML] Enterosignatures define common bacterial guilds in the human gut microbiome

C Frioux, R Ansorge, E Özkurt, CG Nedjad, J Fritscher… - Cell Host & Microbe, 2023 - cell.com
The human gut microbiome composition is generally in a stable dynamic equilibrium, but it
can deteriorate into dysbiotic states detrimental to host health. To disentangle the inherent …

Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture

R Gilroy, A Ravi, M Getino, I Pursley, DL Horton… - PeerJ, 2021 - peerj.com
Background: The chicken is the most abundant food animal in the world. However, despite
its importance, the chicken gut microbiome remains largely undefined. Here, we exploit …

Antibiotic-induced gut dysbiosis and barrier disruption and the potential protective strategies

H Duan, L Yu, F Tian, Q Zhai, L Fan… - Critical reviews in food …, 2022 - Taylor & Francis
The oral antibiotic therapies administered widely to people and animals can cause gut
dysbiosis and barrier disruption inevitably. Increasing attention has been directed toward …