Binary relevance for multi-label learning: an overview

ML Zhang, YK Li, XY Liu, X Geng - Frontiers of Computer Science, 2018 - Springer
Multi-label learning deals with problems where each example is represented by a single
instance while being associated with multiple class labels simultaneously. Binary relevance …

The state of the art in enhancing trust in machine learning models with the use of visualizations

A Chatzimparmpas, RM Martins, I Jusufi… - Computer Graphics …, 2020 - Wiley Online Library
Abstract Machine learning (ML) models are nowadays used in complex applications in
various domains, such as medicine, bioinformatics, and other sciences. Due to their black …

Microbial community assembly and metabolic function during mammalian corpse decomposition

JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren… - Science, 2016 - science.org
Vertebrate corpse decomposition provides an important stage in nutrient cycling in most
terrestrial habitats, yet microbially mediated processes are poorly understood. Here we …

Activity flow over resting-state networks shapes cognitive task activations

MW Cole, T Ito, DS Bassett, DH Schultz - Nature neuroscience, 2016 - nature.com
Resting-state functional connectivity (FC) has helped reveal the intrinsic network
organization of the human brain, yet its relevance to cognitive task activations has been …

Advancing functional connectivity research from association to causation

AT Reid, DB Headley, RD Mill… - Nature …, 2019 - nature.com
Cognition and behavior emerge from brain network interactions, such that investigating
causal interactions should be central to the study of brain function. Approaches that …

Aging effects on DNA methylation modules in human brain and blood tissue

S Horvath, Y Zhang, P Langfelder, RS Kahn… - Genome biology, 2012 - Springer
Background Several recent studies reported aging effects on DNA methylation levels of
individual CpG dinucleotides. But it is not yet known whether aging-related consensus …

Gene regulatory network inference resources: A practical overview

D Mercatelli, L Scalambra, L Triboli, F Ray… - Biochimica et Biophysica …, 2020 - Elsevier
Transcriptional regulation is a fundamental molecular mechanism involved in almost every
aspect of life, from homeostasis to development, from metabolism to behavior, from reaction …

Reorganization of cerebral networks after stroke: new insights from neuroimaging with connectivity approaches

C Grefkes, GR Fink - Brain, 2011 - academic.oup.com
The motor system comprises a network of cortical and subcortical areas interacting via
excitatory and inhibitory circuits, thereby governing motor behaviour. The balance within the …

Noise in biology

LS Tsimring - Reports on Progress in Physics, 2014 - iopscience.iop.org
Noise permeates biology on all levels, from the most basic molecular, sub-cellular
processes to the dynamics of tissues, organs, organisms and populations. The functional …

Geometric interpretation of gene coexpression network analysis

S Horvath, J Dong - PLoS computational biology, 2008 - journals.plos.org
The merging of network theory and microarray data analysis techniques has spawned a new
field: gene coexpression network analysis. While network methods are increasingly used in …