Temporal networks in biology and medicine: a survey on models, algorithms, and tools

MM Hosseinzadeh, M Cannataro, PH Guzzi… - … Modeling Analysis in …, 2022 - Springer
The use of static graphs for modelling and analysis of biological and biomedical data plays a
key role in biomedical research. However, many real-world scenarios present dynamic …

Deleting edges to restrict the size of an epidemic in temporal networks

J Enright, K Meeks, GB Mertzios, V Zamaraev - Journal of Computer and …, 2021 - Elsevier
Spreading processes on graphs are a natural model for a wide variety of real-world
phenomena, including information spread over social networks and biological diseases …

[HTML][HTML] Temporal vertex cover with a sliding time window

EC Akrida, GB Mertzios, PG Spirakis… - Journal of Computer and …, 2020 - Elsevier
Modern, inherently dynamic systems are usually characterized by a network structure which
is subject to discrete changes over time. Given a static underlying graph, a temporal graph …

Edge exploration of temporal graphs

BM Bumpus, K Meeks - Algorithmica, 2023 - Springer
We introduce a natural temporal analogue of Eulerian circuits and prove that, in contrast to
the static case, it is NP-hard to determine whether a given temporal graph is temporally …

Interference-free walks in time: Temporally disjoint paths

N Klobas, GB Mertzios, H Molter, R Niedermeier… - Autonomous Agents and …, 2023 - Springer
We investigate the computational complexity of finding temporally disjoint paths and walks in
temporal graphs. There, the edge set changes over discrete time steps. Temporal paths and …

[HTML][HTML] The complexity of computing optimum labelings for temporal connectivity

N Klobas, GB Mertzios, H Molter, PG Spirakis - Journal of Computer and …, 2024 - Elsevier
A graph is temporally connected if a strict temporal path exists from every vertex u to every
other vertex v. This paper studies temporal design problems for undirected temporally …

Temporal cliques admit sparse spanners

A Casteigts, JG Peters, J Schoeters - Journal of Computer and System …, 2021 - Elsevier
Abstract Let G=(V, E) be an undirected graph on n vertices and λ: E→ 2 N a map** that
assigns to every edge a non-empty set of integer labels (discrete times when the edge is …

Listing All Maximal k-Plexes in Temporal Graphs

M Bentert, AS Himmel, H Molter, M Morik… - Journal of Experimental …, 2019 - dl.acm.org
Many real-world networks evolve over time, that is, new contacts appear and old contacts
may disappear. They can be modeled as temporal graphs where interactions between …

Sharp thresholds in random simple temporal graphs

A Casteigts, M Raskin, M Renken, V Zamaraev - SIAM Journal on Computing, 2024 - SIAM
A graph whose edges only appear at certain points in time is called a temporal graph
(among other names). Such a graph is temporally connected if each ordered pair of vertices …

Cluster editing for multi-layer and temporal graphs

J Chen, H Molter, M Sorge, O Suchý - Theory of Computing Systems, 2024 - Springer
Motivated by the recent rapid growth of research for algorithms to cluster multi-layer and
temporal graphs, we study extensions of the classical Cluster Editing problem. In Multi-Layer …