Embracing the unknown: disentangling the complexities of the soil microbiome

N Fierer - Nature Reviews Microbiology, 2017 - nature.com
Soil microorganisms are clearly a key component of both natural and managed ecosystems.
Despite the challenges of surviving in soil, a gram of soil can contain thousands of individual …

Going back to the roots: the microbial ecology of the rhizosphere

L Philippot, JM Raaijmakers, P Lemanceau… - Nature reviews …, 2013 - nature.com
The rhizosphere is the interface between plant roots and soil where interactions among a
myriad of microorganisms and invertebrates affect biogeochemical cycling, plant growth and …

Unraveling negative biotic interactions determining soil microbial community assembly and functioning

S Romdhane, A Spor, J Aubert, D Bru… - The ISME …, 2022 - academic.oup.com
Microbial communities play important roles in all ecosystems and yet a comprehensive
understanding of the ecological processes governing the assembly of these communities is …

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain

Y Shi, Y Li, X **ang, R Sun, T Yang, D He, K Zhang… - Microbiome, 2018 - Springer
Background The relative importance of stochasticity versus determinism in soil bacterial
communities is unclear, as are the possible influences that alter the balance between these …

Microbial regulation of terrestrial nitrous oxide formation: understanding the biological pathways for prediction of emission rates

HW Hu, D Chen, JZ He - FEMS microbiology reviews, 2015 - academic.oup.com
The continuous increase of the greenhouse gas nitrous oxide (N2O) in the atmosphere due
to increasing anthropogenic nitrogen input in agriculture has become a global concern. In …

Global biogeography of microbial nitrogen-cycling traits in soil

MB Nelson, AC Martiny… - Proceedings of the …, 2016 - National Acad Sciences
Microorganisms drive much of the Earth's nitrogen (N) cycle, but we still lack a global
overview of the abundance and composition of the microorganisms carrying out soil N …

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

N Fierer, JW Leff, BJ Adams… - Proceedings of the …, 2012 - National Acad Sciences
For centuries ecologists have studied how the diversity and functional traits of plant and
animal communities vary across biomes. In contrast, we have only just begun exploring …

Microbial functional genes involved in nitrogen fixation, nitrification and denitrification in forest ecosystems

DJ Levy-Booth, CE Prescott, SJ Grayston - Soil Biology and Biochemistry, 2014 - Elsevier
The understanding of nitrogen (N) cycling in forest ecosystems has undergone a major shift
in the past decade as molecular methods are being used to link microorganisms to key …

Soil carbon, nitrogen, and phosphorus cycling microbial populations and their resistance to global change depend on soil C: N: P stoichiometry

G Luo, C Xue, Q Jiang, Y **ao, F Zhang, S Guo… - Msystems, 2020 - Am Soc Microbiol
Maintaining stability of ecosystem functions in the face of global change calls for a better
understanding regulatory factors of functionally specialized microbial groups and their …

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

JI Prosser, GW Nicol - Trends in microbiology, 2012 - cell.com
Autotrophic archaeal and bacterial ammonia-oxidisers (AOA and AOB) drive soil nitrification.
Ammonia limitation, mixotrophy, and pH have been suggested as factors providing niche …