Embracing the unknown: disentangling the complexities of the soil microbiome

N Fierer - Nature Reviews Microbiology, 2017 - nature.com
Soil microorganisms are clearly a key component of both natural and managed ecosystems.
Despite the challenges of surviving in soil, a gram of soil can contain thousands of individual …

Going back to the roots: the microbial ecology of the rhizosphere

L Philippot, JM Raaijmakers, P Lemanceau… - Nature reviews …, 2013 - nature.com
The rhizosphere is the interface between plant roots and soil where interactions among a
myriad of microorganisms and invertebrates affect biogeochemical cycling, plant growth and …

Unraveling negative biotic interactions determining soil microbial community assembly and functioning

S Romdhane, A Spor, J Aubert, D Bru… - The ISME …, 2022 - academic.oup.com
Microbial communities play important roles in all ecosystems and yet a comprehensive
understanding of the ecological processes governing the assembly of these communities is …

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain

Y Shi, Y Li, X **ang, R Sun, T Yang, D He, K Zhang… - Microbiome, 2018 - Springer
Background The relative importance of stochasticity versus determinism in soil bacterial
communities is unclear, as are the possible influences that alter the balance between these …

Microbial regulation of terrestrial nitrous oxide formation: understanding the biological pathways for prediction of emission rates

HW Hu, D Chen, JZ He - FEMS microbiology reviews, 2015 - academic.oup.com
The continuous increase of the greenhouse gas nitrous oxide (N2O) in the atmosphere due
to increasing anthropogenic nitrogen input in agriculture has become a global concern. In …

Global biogeography of microbial nitrogen-cycling traits in soil

MB Nelson, AC Martiny, JBH Martiny - Proceedings of the National …, 2016 - pnas.org
Microorganisms drive much of the Earth's nitrogen (N) cycle, but we still lack a global
overview of the abundance and composition of the microorganisms carrying out soil N …

Soil microbial biomass: A key soil driver in management of ecosystem functioning

JS Singh, VK Gupta - Science of the Total Environment, 2018 - Elsevier
Although patterns of microbial diversity and biomass have been described and reviewed at
local and regional scales, a unifying driver, or set of environmental drivers affecting soil …

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

N Fierer, JW Leff, BJ Adams, UN Nielsen… - Proceedings of the …, 2012 - pnas.org
For centuries ecologists have studied how the diversity and functional traits of plant and
animal communities vary across biomes. In contrast, we have only just begun exploring …

NCycDB: a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes

Q Tu, L Lin, L Cheng, Y Deng, Z He - Bioinformatics, 2019 - academic.oup.com
Motivation The nitrogen (N) cycle is a collection of important biogeochemical pathways in
the Earth ecosystem and has gained extensive foci in ecology and environmental studies …

Microbial functional genes involved in nitrogen fixation, nitrification and denitrification in forest ecosystems

DJ Levy-Booth, CE Prescott, SJ Grayston - Soil Biology and Biochemistry, 2014 - Elsevier
The understanding of nitrogen (N) cycling in forest ecosystems has undergone a major shift
in the past decade as molecular methods are being used to link microorganisms to key …