Bioinformatics and biomedical informatics with ChatGPT: Year one review

J Wang, Z Cheng, Q Yao, L Liu, D Xu… - Quantitative Biology, 2024 - Wiley Online Library
The year 2023 marked a significant surge in the exploration of applying large language
model chatbots, notably Chat Generative Pre‐trained Transformer (ChatGPT), across …

Leveraging small language models for Text2SPARQL tasks to improve the resilience of AI assistance

F Brei, J Frey, LP Meyer - arxiv preprint arxiv:2405.17076, 2024 - arxiv.org
In this work we will show that language models with less than one billion parameters can be
used to translate natural language to SPARQL queries after fine-tuning. Using three different …

Assessing SPARQL capabilities of Large Language Models

LP Meyer, J Frey, F Brei, N Arndt - arxiv preprint arxiv:2409.05925, 2024 - arxiv.org
The integration of Large Language Models (LLMs) with Knowledge Graphs (KGs) offers
significant synergistic potential for knowledge-driven applications. One possible integration …

Generating SPARQL Queries over CIDOC-CRM using a Two-Stage Ontology Path Patterns Method in LLM Prompts

M Mountantonakis, Y Tzitzikas - ACM Journal on Computing and …, 2024 - dl.acm.org
In this paper, we focus on the task of exploiting the capabilities of Large Language Models
(LLMs) to generate SPARQL Queries for answering natural questions over cultural …

Logic-infused knowledge graph QA: Enhancing large language models for specialized domains through prolog integration

A Bashir, R Peng, Y Ding - Data & Knowledge Engineering, 2025 - Elsevier
Efficiently answering questions over complex, domain-specific knowledge graphs remain a
substantial challenge, as large language models (LLMs) often lack the logical reasoning …

Thinking with Knowledge Graphs: Enhancing LLM Reasoning Through Structured Data

X Wu, K Tsioutsiouliklis - arxiv preprint arxiv:2412.10654, 2024 - arxiv.org
Large Language Models (LLMs) have demonstrated remarkable capabilities in natural
language understanding and generation. However, they often struggle with complex …

Augmented Knowledge Graph Querying leveraging LLMs

M Arazzi, D Ligari, S Nicolazzo, A Nocera - arxiv preprint arxiv …, 2025 - arxiv.org
Adopting Knowledge Graphs (KGs) as a structured, semantic-oriented, data representation
model has significantly improved data integration, reasoning, and querying capabilities …

LinkQ: An LLM-Assisted Visual Interface for Knowledge Graph Question-Answering

H Li, G Appleby, A Suh - 2024 IEEE Visualization and Visual …, 2024 - ieeexplore.ieee.org
We present LinkQ, a system that leverages a large language model (LLM) to facilitate
knowledge graph (KG) query construction through natural language question-answering …

SpeechCraft: An Integrated Data Generation Pipeline from Videos for LLM Finetuning

VSM Vuppalapati, SD Modi… - … on Automation and …, 2024 - ieeexplore.ieee.org
Customizing Large Language Models (LLMs) for specific tasks demands high-quality,
domain-specific datasets. Existing solutions often struggle with extracting meaningful and …