A drug-likeness toolbox facilitates ADMET study in drug discovery

CY Jia, JY Li, GF Hao, GF Yang - Drug discovery today, 2020 - Elsevier
Highlights•Online resources facilitate in silico drug-likeness study.•Databases gathering
high quality and up to date data are essential for drug-likeness evaluation.•Web servers for …

P-glycoprotein: one mechanism, many tasks and the consequences for pharmacotherapy of cancers

A Seelig - Frontiers in oncology, 2020 - frontiersin.org
P-glycoprotein or multidrug resistance protein (MDR1) is an adenosine triphosphate (ATP)
binding cassette transporter (ABCB1) intensely investigated because it is an obstacle to …

Could graph neural networks learn better molecular representation for drug discovery? A comparison study of descriptor-based and graph-based models

D Jiang, Z Wu, CY Hsieh, G Chen, B Liao… - Journal of …, 2021 - Springer
Graph neural networks (GNN) has been considered as an attractive modelling method for
molecular property prediction, and numerous studies have shown that GNN could yield …

Comparison of deep learning with multiple machine learning methods and metrics using diverse drug discovery data sets

A Korotcov, V Tkachenko, DP Russo… - Molecular …, 2017 - ACS Publications
Machine learning methods have been applied to many data sets in pharmaceutical research
for several decades. The relative ease and availability of fingerprint type molecular …

Cell permeability beyond the rule of 5

P Matsson, BC Doak, B Over, J Kihlberg - Advanced drug delivery reviews, 2016 - Elsevier
Drug discovery for difficult targets that have large and flat binding sites is often better suited
to compounds beyond the “rule of 5”(bRo5). However, such compounds carry higher …

vNN web server for ADMET predictions

P Schyman, R Liu, V Desai, A Wallqvist - Frontiers in pharmacology, 2017 - frontiersin.org
In drug development, early assessments of pharmacokinetic and toxic properties are
important step** stones to avoid costly and unnecessary failures. Considerable progress …

The role of uptake and efflux transporters in the disposition of glucuronide and sulfate conjugates

E Järvinen, F Deng, W Kiander, A Sinokki… - Frontiers in …, 2022 - frontiersin.org
Glucuronidation and sulfation are the most typical phase II metabolic reactions of drugs. The
resulting glucuronide and sulfate conjugates are generally considered inactive and safe …

[HTML][HTML] Prediction of drug–ABC-transporter interaction—Recent advances and future challenges

F Montanari, GF Ecker - Advanced drug delivery reviews, 2015 - Elsevier
With the discovery of P-glycoprotein (P-gp), it became evident that ABC-transporters play a
vital role in bioavailability and toxicity of drugs. They prevent intracellular accumulation of …

Interpretable-ADMET: a web service for ADMET prediction and optimization based on deep neural representation

Y Wei, S Li, Z Li, Z Wan, J Lin - Bioinformatics, 2022 - academic.oup.com
Motivation In the process of discovery and optimization of lead compounds, it is difficult for
non-expert pharmacologists to intuitively determine the contribution of substructure to a …

Explaining blood–brain barrier permeability of small molecules by integrated analysis of different transport mechanisms

FMG Cornelissen, G Markert, G Deutsch… - Journal of Medicinal …, 2023 - ACS Publications
The blood–brain barrier (BBB) represents a major obstacle to delivering drugs to the central
nervous system (CNS), resulting in the lack of effective treatment for many CNS diseases …