Biclustering algorithms for biological data analysis: a survey

SC Madeira, AL Oliveira - IEEE/ACM transactions on …, 2004‏ - ieeexplore.ieee.org
A large number of clustering approaches have been proposed for the analysis of gene
expression data obtained from microarray experiments. However, the results from the …

Clustering algorithms: their application to gene expression data

J Oyelade, I Isewon, F Oladipupo… - … and Biology insights, 2016‏ - journals.sagepub.com
Gene expression data hide vital information required to understand the biological process
that takes place in a particular organism in relation to its environment. Deciphering the …

[ספר][B] Data clustering: theory, algorithms, and applications

G Gan, C Ma, J Wu - 2020‏ - SIAM
The monograph Data Clustering: Theory, Algorithms, and Applications was published in
2007. Starting with the common ground and knowledge for data clustering, the monograph …

Cluster analysis for gene expression data: a survey

D Jiang, C Tang, A Zhang - IEEE Transactions on knowledge …, 2004‏ - ieeexplore.ieee.org
DNA microarray technology has now made it possible to simultaneously monitor the
expression levels of thousands of genes during important biological processes and across …

FABIA: factor analysis for bicluster acquisition

S Hochreiter, U Bodenhofer, M Heusel, A Mayr… - …, 2010‏ - academic.oup.com
Motivation: Biclustering of transcriptomic data groups genes and samples simultaneously. It
is emerging as a standard tool for extracting knowledge from gene expression …

[ספר][B] Statistical analysis of gene expression microarray data

T Speed - 2003‏ - taylorfrancis.com
Although less than a decade old, the field of microarray data analysis is now thriving and
growing at a remarkable pace. Biologists, geneticists, and computer scientists as well as …

Tricluster: an effective algorithm for mining coherent clusters in 3d microarray data

L Zhao, MJ Zaki - Proceedings of the 2005 ACM SIGMOD international …, 2005‏ - dl.acm.org
In this paper we introduce a novel algorithm called TRICLUSTER, for mining coherent
clusters in three-dimensional (3D) gene expression datasets. TRICLUSTER can mine …

[ספר][B] Multiobjective genetic algorithms for clustering: applications in data mining and bioinformatics

U Maulik, S Bandyopadhyay, A Mukhopadhyay - 2011‏ - books.google.com
This is the first book primarily dedicated to clustering using multiobjective genetic algorithms
with extensive real-life applications in data mining and bioinformatics. The authors first offer …

[ספר][B] Handbook of computational molecular biology

S Aluru - 2005‏ - taylorfrancis.com
The enormous complexity of biological systems at the molecular level must be answered
with powerful computational methods. Computational biology is a young field, but has seen …

Improved biclustering of microarray data demonstrated through systematic performance tests

H Turner, T Bailey, W Krzanowski - Computational statistics & data analysis, 2005‏ - Elsevier
A new algorithm is presented for fitting the plaid model, a biclustering method developed for
clustering gene expression data. The approach is based on speedy individual differences …