Plant-polysaccharide-degrading enzymes from basidiomycetes

J Rytioja, K Hildén, J Yuzon, A Hatakka… - Microbiology and …, 2014 - Am Soc Microbiol
Basidiomycete fungi subsist on various types of plant material in diverse environments, from
living and dead trees and forest litter to crops and grasses and to decaying plant matter in …

The multiple origins of complex multicellularity

AH Knoll - Annual Review of Earth and Planetary Sciences, 2011 - annualreviews.org
Simple multicellularity has evolved numerous times within the Eukarya, but complex
multicellular organisms belong to only six clades: animals, embryophytic land plants …

Prediction of effector protein structures from fungal phytopathogens enables evolutionary analyses

K Seong, KV Krasileva - Nature Microbiology, 2023 - nature.com
Elucidating the similarity and diversity of pathogen effectors is critical to understand their
evolution across fungal phytopathogens. However, rapid divergence that diminishes …

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data

JW Spatafora, Y Chang, GL Benny, K Lazarus… - Mycologia, 2016 - Taylor & Francis
Zygomycete fungi were classified as a single phylum, Zygomycota, based on sexual
reproduction by zygospores, frequent asexual reproduction by sporangia, absence of …

Notes, outline and divergence times of Basidiomycota

MQ He, RL Zhao, KD Hyde, D Begerow, M Kemler… - Fungal diversity, 2019 - Springer
The Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in
species numbers to the Ascomycota. The present work provides an overview of all validly …

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

R Riley, AA Salamov, DW Brown… - Proceedings of the …, 2014 - National Acad Sciences
Basidiomycota (basidiomycetes) make up 32% of the described fungi and include most
wood-decaying species, as well as pathogens and mutualistic symbionts. Wood-decaying …

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

J Sperschneider, PN Dodds… - Molecular plant …, 2018 - Wiley Online Library
Plant‐pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

RA Ohm, N Feau, B Henrissat, CL Schoch… - PLoS …, 2012 - journals.plos.org
The class Dothideomycetes is one of the largest groups of fungi with a high level of
ecological diversity including many plant pathogens infecting a broad range of hosts. Here …

EffectorP: predicting fungal effector proteins from secretomes using machine learning

J Sperschneider, DM Gardiner, PN Dodds… - New …, 2016 - Wiley Online Library
Eukaryotic filamentous plant pathogens secrete effector proteins that modulate the host cell
to facilitate infection. Computational effector candidate identification and subsequent …

Genome sequence of the model mushroom Schizophyllum commune

RA Ohm, JF De Jong, LG Lugones, A Aerts… - Nature …, 2010 - nature.com
Much remains to be learned about the biology of mushroom-forming fungi, which are an
important source of food, secondary metabolites and industrial enzymes. The wood …