The effects of temperature on aerobic metabolism: towards a mechanistic understanding of the responses of ectotherms to a changing environment

PM Schulte - The Journal of experimental biology, 2015 - journals.biologists.com
Because of its profound effects on the rates of biological processes such as aerobic
metabolism, environmental temperature plays an important role in sha** the distribution …

Protein allostery and conformational dynamics

J Guo, HX Zhou - Chemical reviews, 2016 - ACS Publications
The functions of many proteins are regulated through allostery, whereby effector binding at a
distal site changes the functional activity (eg, substrate binding affinity or catalytic efficiency) …

Protein ensembles: how does nature harness thermodynamic fluctuations for life? The diverse functional roles of conformational ensembles in the cell

G Wei, W **, R Nussinov, B Ma - Chemical reviews, 2016 - ACS Publications
All soluble proteins populate conformational ensembles that together constitute the native
state. Their fluctuations in water are intrinsic thermodynamic phenomena, and the …

[HTML][HTML] Allostery in disease and in drug discovery

R Nussinov, CJ Tsai - Cell, 2013 - cell.com
Allostery is largely associated with conformational and functional transitions in individual
proteins. This concept can be extended to consider the impact of conformational …

There's plenty of room right here: Biological systems as evolved, overloaded, multi-scale machines

J Bongard, M Levin - Biomimetics, 2023 - mdpi.com
There’s Plenty of Room Right Here: Biological Systems as Evolved, Overloaded,
Multi-Scale Machines Next Article in Journal Exploration of the Design of Spiderweb-Inspired …

Global analysis of protein structural changes in complex proteomes

Y Feng, G De Franceschi, A Kahraman, M Soste… - Nature …, 2014 - nature.com
Abstract Changes in protein conformation can affect protein function, but methods to probe
these structural changes on a global scale in cells have been lacking. To enable large-scale …

A skin-specific α-Synuclein seeding amplification assay for diagnosing Parkinson's disease

Y Kuang, H Mao, T Gan, W Guo, W Dai… - npj Parkinson's …, 2024 - nature.com
The seeding amplification assay (SAA) has recently emerged as a valuable tool for detecting
α-synuclein (αSyn) aggregates in various clinically accessible biospecimens. Despite its …

Structural flexibility and protein adaptation to temperature: Molecular dynamics analysis of malate dehydrogenases of marine molluscs

Y Dong, M Liao, X Meng, GN Somero - Proceedings of the National …, 2018 - pnas.org
Orthologous proteins of species adapted to different temperatures exhibit differences in
stability and function that are interpreted to reflect adaptive variation in structural “flexibility.” …

Structural and energetic basis of allostery

VJ Hilser, JO Wrabl, HN Motlagh - Annual review of biophysics, 2012 - annualreviews.org
Allostery is a biological phenomenon of fundamental importance in regulation and signaling,
and efforts to understand this process have led to the development of numerous models. In …

Biophysics of protein evolution and evolutionary protein biophysics

T Sikosek, HS Chan - Journal of The Royal Society …, 2014 - royalsocietypublishing.org
The study of molecular evolution at the level of protein-coding genes often entails comparing
large datasets of sequences to infer their evolutionary relationships. Despite the importance …