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A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
Genome-scale stoichiometric modeling of metabolism has become a standard systems
biology tool for modeling cellular physiology and growth. Extensions of this approach are …
biology tool for modeling cellular physiology and growth. Extensions of this approach are …
Tumor evolution: Linear, branching, neutral or punctuated?
Intratumor heterogeneity has been widely reported in human cancers, but our knowledge of
how this genetic diversity emerges over time remains limited. A central challenge in studying …
how this genetic diversity emerges over time remains limited. A central challenge in studying …
A Big Bang model of human colorectal tumor growth
What happens in early, still undetectable human malignancies is unknown because direct
observations are impractical. Here we present and validate a'Big Bang'model, whereby …
observations are impractical. Here we present and validate a'Big Bang'model, whereby …
Morphological instability and roughening of growing 3D bacterial colonies
How do growing bacterial colonies get their shapes? While colony morphogenesis is well
studied in two dimensions, many bacteria grow as large colonies in three-dimensional (3D) …
studied in two dimensions, many bacteria grow as large colonies in three-dimensional (3D) …
[HTML][HTML] Intestinal crypt homeostasis results from neutral competition between symmetrically dividing Lgr5 stem cells
Intestinal stem cells, characterized by high Lgr5 expression, reside between Paneth cells at
the small intestinal crypt base and divide every day. We have carried out fate map** of …
the small intestinal crypt base and divide every day. We have carried out fate map** of …
Solutions to the public goods dilemma in bacterial biofilms
Bacteria frequently live in densely populated surface-bound communities, termed biofilms [1–
4]. Biofilm-dwelling cells rely on secretion of extracellular substances to construct their …
4]. Biofilm-dwelling cells rely on secretion of extracellular substances to construct their …
Impact of deleterious passenger mutations on cancer progression
Cancer progression is driven by the accumulation of a small number of genetic alterations.
However, these few driver alterations reside in a cancer genome alongside tens of …
However, these few driver alterations reside in a cancer genome alongside tens of …
Universal patterns of stem cell fate in cycling adult tissues
In cycling tissues that exhibit high turnover, tissue maintenance and repair are coordinated
by stem cells. But, how frequently stem cells are replaced following differentiation, aging or …
by stem cells. But, how frequently stem cells are replaced following differentiation, aging or …
Life is physics: evolution as a collective phenomenon far from equilibrium
N Goldenfeld, C Woese - Annu. Rev. Condens. Matter Phys., 2011 - annualreviews.org
Evolution is the fundamental physical process that gives rise to biological phenomena. Yet it
is widely treated as a subset of population genetics, and thus its scope is artificially limited …
is widely treated as a subset of population genetics, and thus its scope is artificially limited …
Fluid mixing from viscous fingering
Mixing efficiency at low Reynolds numbers can be enhanced by exploiting hydrodynamic
instabilities that induce heterogeneity and disorder in the flow. The unstable displacement of …
instabilities that induce heterogeneity and disorder in the flow. The unstable displacement of …