New opportunities in plant microbiome engineering for increasing agricultural sustainability under stressful conditions

MS Afridi, MA Javed, S Ali, FHV De Medeiros… - Frontiers in Plant …, 2022 - frontiersin.org
Plant microbiome (or phytomicrobiome) engineering (PME) is an anticipated untapped
alternative strategy that could be exploited for plant growth, health and productivity under …

A decade of advances in transposon-insertion sequencing

AK Cain, L Barquist, AL Goodman, IT Paulsen… - Nature Reviews …, 2020 - nature.com
It has been 10 years since the introduction of modern transposon-insertion sequencing (TIS)
methods, which combine genome-wide transposon mutagenesis with high-throughput …

Microbiome engineering: synthetic biology of plant-associated microbiomes in sustainable agriculture

J Ke, B Wang, Y Yoshikuni - Trends in Biotechnology, 2021 - cell.com
To support an ever-increasing population, modern agriculture faces numerous challenges
that pose major threats to global food and energy security. Plant-associated microbes, with …

Mutant phenotypes for thousands of bacterial genes of unknown function

MN Price, KM Wetmore, RJ Waters, M Callaghan… - Nature, 2018 - nature.com
One-third of all protein-coding genes from bacterial genomes cannot be annotated with a
function. Here, to investigate the functions of these genes, we present genome-wide mutant …

Rhizobia: from saprophytes to endosymbionts

P Poole, V Ramachandran, J Terpolilli - Nature Reviews Microbiology, 2018 - nature.com
Rhizobia are some of the best-studied plant microbiota. These oligotrophic
Alphaproteobacteria or Betaproteobacteria form symbioses with their legume hosts …

Construction and analysis of two genome-scale deletion libraries for Bacillus subtilis

BM Koo, G Kritikos, JD Farelli, H Todor, K Tong… - Cell systems, 2017 - cell.com
A systems-level understanding of Gram-positive bacteria is important from both an
environmental and health perspective and is most easily obtained when high-quality …

A genome-wide algal mutant library and functional screen identifies genes required for eukaryotic photosynthesis

X Li, W Patena, F Fauser, RE **kerson, S Saroussi… - Nature …, 2019 - nature.com
Photosynthetic organisms provide food and energy for nearly all life on Earth, yet half of their
protein-coding genes remain uncharacterized,. Characterization of these genes could be …

Genome-wide map** of mutations at single-nucleotide resolution for protein, metabolic and genome engineering

AD Garst, MC Bassalo, G Pines, SA Lynch… - Nature …, 2017 - nature.com
Improvements in DNA synthesis and sequencing have underpinned comprehensive
assessment of gene function in bacteria and eukaryotes. Genome-wide analyses require …

Competition, Nodule Occupancy, and Persistence of Inoculant Strains: Key Factors in the Rhizobium-Legume Symbioses

M Mendoza-Suárez, SU Andersen, PS Poole… - Frontiers in Plant …, 2021 - frontiersin.org
Biological nitrogen fixation by Rhizobium-legume symbioses represents an environmentally
friendly and inexpensive alternative to the use of chemical nitrogen fertilizers in legume …

Pooled CRISPR interference screening enables genome-scale functional genomics study in bacteria with superior performance

T Wang, C Guan, J Guo, B Liu, Y Wu, Z **e… - Nature …, 2018 - nature.com
To fully exploit the microbial genome resources, a high-throughput experimental platform is
needed to associate genes with phenotypes at the genome level. We present here a novel …