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Taxonomy, physiology, and natural products of Actinobacteria
EA Barka, P Vatsa, L Sanchez… - Microbiology and …, 2016 - journals.asm.org
Actinobacteria are Gram-positive bacteria with high G+ C DNA content that constitute one of
the largest bacterial phyla, and they are ubiquitously distributed in both aquatic and …
the largest bacterial phyla, and they are ubiquitously distributed in both aquatic and …
Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
The field of microbial taxonomy is dynamic, aiming to provide a stable and contemporary
classification system for prokaryotes. Traditionally, reliance on phenotypic characteristics …
classification system for prokaryotes. Traditionally, reliance on phenotypic characteristics …
TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes
JP Meier-Kolthoff, JS Carbasse… - Nucleic acids …, 2022 - academic.oup.com
Microbial systematics is heavily influenced by genome-based methods and challenged by
an ever increasing number of taxon names and associated sequences in public data …
an ever increasing number of taxon names and associated sequences in public data …
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
Microbial taxonomy is increasingly influenced by genome-based computational methods.
Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS …
Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS …
Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria
A Hördt, MG López, JP Meier-Kolthoff… - Frontiers in …, 2020 - frontiersin.org
The class Alphaproteobacteria is comprised of a diverse assemblage of Gram-negative
bacteria that includes organisms of varying morphologies, physiologies and habitat …
bacteria that includes organisms of varying morphologies, physiologies and habitat …
[HTML][HTML] Genome-based taxonomic classification of the phylum Actinobacteria
The application of phylogenetic taxonomic procedures led to improvements in the
classification of bacteria assigned to the phylum Actinobacteria but even so there remains a …
classification of bacteria assigned to the phylum Actinobacteria but even so there remains a …
Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes
M García-López, JP Meier-Kolthoff, BJ Tindall… - Frontiers in …, 2019 - frontiersin.org
Although considerable progress has been made in recent years regarding the classification
of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify …
of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify …
VICTOR: genome-based phylogeny and classification of prokaryotic viruses
Motivation Bacterial and archaeal viruses are crucial for global biogeochemical cycles and
might well be game-changing therapeutic agents in the fight against multi-resistant …
might well be game-changing therapeutic agents in the fight against multi-resistant …
The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota
I Lagkouvardos, R Pukall, B Abt, BU Foesel… - Nature …, 2016 - nature.com
Intestinal bacteria influence mammalian physiology, but many types of bacteria are still
uncharacterized. Moreover, reference strains of mouse gut bacteria are not easily available …
uncharacterized. Moreover, reference strains of mouse gut bacteria are not easily available …
Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
JP Meier-Kolthoff, RL Hahnke, J Petersen… - Standards in genomic …, 2014 - Springer
Although Escherichia coli is the most widely studied bacterial model organism and often
considered to be the model bacterium per se, its type strain was until now forgotten from …
considered to be the model bacterium per se, its type strain was until now forgotten from …