Stochastic Evaluation of Many-Body van der Waals Energies in Large Complex Systems
We propose a new strategy to solve the key equations of the many-body dispersion (MBD)
model by Tkatchenko, DiStasio Jr., and Ambrosetti. Our approach overcomes the original O …
model by Tkatchenko, DiStasio Jr., and Ambrosetti. Our approach overcomes the original O …
General formulation of polarizable embedding models and of their coupling
We propose a general formalism for polarizable embedding models that can be applied to
either continuum or atomistic polarizable models. After deriving such a formalism for both …
either continuum or atomistic polarizable models. After deriving such a formalism for both …
Implicit solvents for the polarizable atomic multipole AMOEBA force field
Computational protein design, ab initio protein/RNA folding, and protein–ligand screening
can be too computationally demanding for explicit treatment of solvent. For these …
can be too computationally demanding for explicit treatment of solvent. For these …
Smooth particle mesh Ewald-integrated stochastic Lanczos many-body dispersion algorithm
We derive and implement an alternative formulation of the Stochastic Lanczos algorithm to
be employed in connection with the Many-Body Dispersion model (MBD). Indeed, this …
be employed in connection with the Many-Body Dispersion model (MBD). Indeed, this …
A generalized Kirkwood implicit solvent for the polarizable AMOEBA protein model
Computational simulation of biomolecules can provide important insights into protein
design, protein-ligand binding interactions, and ab initio biomolecular folding, among other …
design, protein-ligand binding interactions, and ab initio biomolecular folding, among other …
Variational formulation of the bond capacity charge polarization model
PP Poier - The Journal of Chemical Physics, 2022 - pubs.aip.org
We present an alternative energy formulation of the bond capacity charge polarization
model to be used in molecular dynamics simulations. The energy expression consists of a …
model to be used in molecular dynamics simulations. The energy expression consists of a …
[BOOK][B] Implicit Solvents for the Polarizable Atomic Multipole AMOEBA Force Field: Application to Small Molecules, Proteins, and Nucleic Acids
RA Corrigan - 2023 - search.proquest.com
Computational protein design, ab initio protein/RNA folding, and protein-ligand screening
can be too computationally demanding for explicit treatment of solvent. For these …
can be too computationally demanding for explicit treatment of solvent. For these …
[PDF][PDF] O (N) Stochastic Evaluation of Many-Body van der
Van der Waals dispersion interactions play a crucial role in nature, determining the structure
and functionality of molecular 13 systems and materials, 1, 2 two examples being the …
and functionality of molecular 13 systems and materials, 1, 2 two examples being the …