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[HTML][HTML] Computational pathology: a survey review and the way forward
Abstract Computational Pathology (CPath) is an interdisciplinary science that augments
developments of computational approaches to analyze and model medical histopathology …
developments of computational approaches to analyze and model medical histopathology …
Nucleus segmentation: towards automated solutions
Single nucleus segmentation is a frequent challenge of microscopy image processing, since
it is the first step of many quantitative data analysis pipelines. The quality of tracking single …
it is the first step of many quantitative data analysis pipelines. The quality of tracking single …
Democratising deep learning for microscopy with ZeroCostDL4Mic
Deep Learning (DL) methods are powerful analytical tools for microscopy and can
outperform conventional image processing pipelines. Despite the enthusiasm and …
outperform conventional image processing pipelines. Despite the enthusiasm and …
Deep Visual Proteomics defines single-cell identity and heterogeneity
Despite the availabilty of imaging-based and mass-spectrometry-based methods for spatial
proteomics, a key challenge remains connecting images with single-cell-resolution protein …
proteomics, a key challenge remains connecting images with single-cell-resolution protein …
Advances and opportunities in image analysis of bacterial cells and communities
H Jeckel, K Drescher - FEMS Microbiology Reviews, 2021 - academic.oup.com
The cellular morphology and sub-cellular spatial structure critically influence the function of
microbial cells. Similarly, the spatial arrangement of genotypes and phenotypes in microbial …
microbial cells. Similarly, the spatial arrangement of genotypes and phenotypes in microbial …
Nuinsseg: a fully annotated dataset for nuclei instance segmentation in h&e-stained histological images
A Mahbod, C Polak, K Feldmann, R Khan, K Gelles… - Scientific Data, 2024 - nature.com
In computational pathology, automatic nuclei instance segmentation plays an essential role
in whole slide image analysis. While many computerized approaches have been proposed …
in whole slide image analysis. While many computerized approaches have been proposed …
Deep learning for bioimage analysis in developmental biology
Deep learning has transformed the way large and complex image datasets can be
processed, resha** what is possible in bioimage analysis. As the complexity and size of …
processed, resha** what is possible in bioimage analysis. As the complexity and size of …
Nisnet3d: Three-dimensional nuclear synthesis and instance segmentation for fluorescence microscopy images
The primary step in tissue cytometry is the automated distinction of individual cells
(segmentation). Since cell borders are seldom labeled, cells are generally segmented by …
(segmentation). Since cell borders are seldom labeled, cells are generally segmented by …
Label-free live cell recognition and tracking for biological discoveries and translational applications
Label-free, live cell recognition (ie instance segmentation) and tracking using computer
vision-aided recognition can be a powerful tool that rapidly generates multi-modal readouts …
vision-aided recognition can be a powerful tool that rapidly generates multi-modal readouts …
EXACT: a collaboration toolset for algorithm-aided annotation of images with annotation version control
In many research areas, scientific progress is accelerated by multidisciplinary access to
image data and their interdisciplinary annotation. However, kee** track of these …
image data and their interdisciplinary annotation. However, kee** track of these …