Perspective: Advances, challenges, and insight for predictive coarse-grained models
WG Noid - The Journal of Physical Chemistry B, 2023 - ACS Publications
By averaging over atomic details, coarse-grained (CG) models provide profound
computational and conceptual advantages for studying soft materials. In particular, bottom …
computational and conceptual advantages for studying soft materials. In particular, bottom …
The power of coarse graining in biomolecular simulations
Computational modeling of biological systems is challenging because of the multitude of
spatial and temporal scales involved. Replacing atomistic detail with lower resolution …
spatial and temporal scales involved. Replacing atomistic detail with lower resolution …
Perspective: Coarse-grained models for biomolecular systems
WG Noid - The Journal of chemical physics, 2013 - pubs.aip.org
By focusing on essential features, while averaging over less important details, coarse-
grained (CG) models provide significant computational and conceptual advantages with …
grained (CG) models provide significant computational and conceptual advantages with …
The MARTINI force field: coarse grained model for biomolecular simulations
We present an improved and extended version of our coarse grained lipid model. The new
version, coined the MARTINI force field, is parametrized in a systematic way, based on the …
version, coined the MARTINI force field, is parametrized in a systematic way, based on the …
The MARTINI coarse-grained force field: extension to proteins
Many biologically interesting phenomena occur on a time scale that is too long to be studied
by atomistic simulations. These phenomena include the dynamics of large proteins and self …
by atomistic simulations. These phenomena include the dynamics of large proteins and self …
Aggregation and vesiculation of membrane proteins by curvature-mediated interactions
Abstract Membrane remodelling,,,, plays an important role in cellular tasks such as
endocytosis, vesiculation and protein sorting, and in the biogenesis of organelles such as …
endocytosis, vesiculation and protein sorting, and in the biogenesis of organelles such as …
Nanoporous graphene as a reverse osmosis membrane: recent insights from theory and simulation
In this review, we examine the potential and the challenges of designing an ultrathin reverse
osmosis (RO) membrane from graphene, focusing on the role of computational methods in …
osmosis (RO) membrane from graphene, focusing on the role of computational methods in …
[BUCH][B] Coarse-graining of condensed phase and biomolecular systems
GA Voth - 2008 - taylorfrancis.com
Exploring recent developments in the field, Coarse-Graining of Condensed Phase and
Biomolecular Systems examines systematic ways of constructing coarse-grained …
Biomolecular Systems examines systematic ways of constructing coarse-grained …
Multiscale simulation of soft matter systems–from the atomistic to the coarse-grained level and back
Many physical phenomena and properties of soft matter systems such as synthetic or
biological materials are governed by interactions and processes on a wide range of length …
biological materials are governed by interactions and processes on a wide range of length …
[HTML][HTML] Lipids on the move: simulations of membrane pores, domains, stalks and curves
In this review we describe the state-of-the-art of computer simulations studies of lipid
membranes. We focus on collective lipid–lipid and lipid–protein interactions that trigger …
membranes. We focus on collective lipid–lipid and lipid–protein interactions that trigger …