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From hairballs to hypotheses–biological insights from microbial networks
Microbial networks are an increasingly popular tool to investigate microbial community
structure, as they integrate multiple types of information and may represent systems-level …
structure, as they integrate multiple types of information and may represent systems-level …
[HTML][HTML] Network analysis methods for studying microbial communities: A mini review
MS Matchado, M Lauber, S Reitmeier… - Computational and …, 2021 - Elsevier
Microorganisms including bacteria, fungi, viruses, protists and archaea live as communities
in complex and contiguous environments. They engage in numerous inter-and intra …
in complex and contiguous environments. They engage in numerous inter-and intra …
Resource competition predicts assembly of gut bacterial communities in vitro
Microbial community dynamics arise through interspecies interactions, including resource
competition, cross-feeding and pH modulation. The individual contributions of these …
competition, cross-feeding and pH modulation. The individual contributions of these …
The social network of microorganisms—how auxotrophies shape complex communities
Microorganisms engage in complex interactions with other organisms and their
environment. Recent studies have shown that these interactions are not limited to the …
environment. Recent studies have shown that these interactions are not limited to the …
Microbial coexistence in the rhizosphere and the promotion of plant stress resistance: a review
J Ge, D Li, J Ding, X **ao, Y Liang - Environmental Research, 2023 - Elsevier
Plants can recruit soil microorganisms into the rhizosphere when experiencing various
environmental stresses, including biotic (eg, insect pests) and abiotic (eg, heavy metal …
environmental stresses, including biotic (eg, insect pests) and abiotic (eg, heavy metal …
[HTML][HTML] Microbial communities as dynamical systems
Highlights•Ordination plots visualize movement through community space.•Generalized
Lotka–Volterra (gLV) model predicts stability and responses to perturbation.•gLV model …
Lotka–Volterra (gLV) model predicts stability and responses to perturbation.•gLV model …
Root exudates and rhizosphere soil bacterial relationships of Nitraria tangutorum are linked to k-strategists bacterial community under salt stress
Y Pan, P Kang, M Tan, J Hu, Y Zhang… - Frontiers in Plant …, 2022 - frontiersin.org
When plants are subjected to various biotic and abiotic stresses, the root system responds
actively by secreting different types and amounts of bioactive compounds, while affects the …
actively by secreting different types and amounts of bioactive compounds, while affects the …
Resource competition can explain simplicity in microbial community assembly
Predicting the composition and diversity of communities is a central goal in ecology. While
community assembly is considered hard to predict, laboratory microcosms often follow a …
community assembly is considered hard to predict, laboratory microcosms often follow a …
How and why men and women differ in their microbiomes: medical ecology and network analyses of the microgenderome
Z Ma, W Li - Advanced Science, 2019 - Wiley Online Library
Microgenderome or sexual dimorphism in microbiome refers to the bidirectional interactions
between microbiotas, sex hormones, and immune systems, and it is highly relevant to …
between microbiotas, sex hormones, and immune systems, and it is highly relevant to …
Ecology-guided prediction of cross-feeding interactions in the human gut microbiome
Understanding a complex microbial ecosystem such as the human gut microbiome requires
information about both microbial species and the metabolites they produce and secrete …
information about both microbial species and the metabolites they produce and secrete …