Artificial intelligence for natural product drug discovery

MW Mullowney, KR Duncan, SS Elsayed… - Nature Reviews Drug …, 2023 - nature.com
Developments in computational omics technologies have provided new means to access
the hidden diversity of natural products, unearthing new potential for drug discovery. In …

Machine and deep learning approaches for cancer drug repurposing

NT Issa, V Stathias, S Schürer… - Seminars in cancer …, 2021 - Elsevier
Abstract Knowledge of the underpinnings of cancer initiation, progression and metastasis
has increased exponentially in recent years. Advanced “omics” coupled with machine …

Enhancing activity prediction models in drug discovery with the ability to understand human language

P Seidl, A Vall, S Hochreiter… - … on Machine Learning, 2023 - proceedings.mlr.press
Activity and property prediction models are the central workhorses in drug discovery and
materials sciences, but currently, they have to be trained or fine-tuned for new tasks. Without …

The ChEMBL database in 2017

A Gaulton, A Hersey, M Nowotka, AP Bento… - Nucleic acids …, 2017 - academic.oup.com
ChEMBL is an open large-scale bioactivity database (https://www. ebi. ac. uk/chembl),
previously described in the 2012 and 2014 Nucleic Acids Research Database Issues. Since …

PubChem 2023 update

S Kim, J Chen, T Cheng, A Gindulyte, J He… - Nucleic acids …, 2023 - academic.oup.com
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a popular chemical information
resource that serves a wide range of use cases. In the past two years, a number of changes …

The ChEMBL bioactivity database: an update

AP Bento, A Gaulton, A Hersey, LJ Bellis… - Nucleic acids …, 2014 - academic.oup.com
ChEMBL is an open large-scale bioactivity database (https://www. ebi. ac. uk/chembl),
previously described in the 2012 Nucleic Acids Research Database Issue. Since then, a …

Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

Pubchem bioassay: 2017 update

Y Wang, SH Bryant, T Cheng, J Wang… - Nucleic acids …, 2017 - academic.oup.com
PubChem's BioAssay database (https://pubchem. ncbi. nlm. nih. gov) has served as a public
repository for small-molecule and RNAi screening data since 2004 providing open access of …

DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal

S Zheng, J Aldahdooh, T Shadbahr… - Nucleic acids …, 2021 - academic.oup.com
Combinatorial therapies that target multiple pathways have shown great promises for
treating complex diseases. DrugComb (https://drugcomb. org/) is a web-based portal for the …

A rule-based named-entity recognition method for knowledge extraction of evidence-based dietary recommendations

T Eftimov, B Koroušić Seljak, P Korošec - PloS one, 2017 - journals.plos.org
Evidence-based dietary information represented as unstructured text is a crucial information
that needs to be accessed in order to help dietitians follow the new knowledge arrives daily …