Proteomics of plant pathogenic fungi

R González-Fernández, E Prats… - BioMed Research …, 2010 - Wiley Online Library
Plant pathogenic fungi cause important yield losses in crops. In order to develop efficient
and environmental friendly crop protection strategies, molecular studies of the fungal …

Metadata matters: access to image data in the real world

M Linkert, CT Rueden, C Allan, JM Burel… - Journal of Cell …, 2010 - rupress.org
Data sharing is important in the biological sciences to prevent duplication of effort, to
promote scientific integrity, and to facilitate and disseminate scientific discovery. Sharing …

The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae

MC Teixeira, P Monteiro, P Jain, S Tenreiro… - Nucleic acids …, 2006 - academic.oup.com
Abstract We present the YEAst Search for Transcriptional Regulators And Consensus
Tracking (YEASTRACT; www. yeastract. com) database, a tool for the analysis of …

Transmembrane topology and signal peptide prediction using dynamic bayesian networks

SM Reynolds, L Käll, ME Riffle, JA Bilmes… - PLoS computational …, 2008 - journals.plos.org
Hidden Markov models (HMMs) have been successfully applied to the tasks of
transmembrane protein topology prediction and signal peptide prediction. In this paper we …

[HTML][HTML] Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research

JA Vizcaíno, JM Foster, L Martens - Journal of proteomics, 2010 - Elsevier
Despite the fact that data deposition is not a generalised fact yet in the field of proteomics,
several mass spectrometry (MS) based proteomics repositories are publicly available for the …

HOPS prevents the disassembly of trans‐SNARE complexes by Sec17p/Sec18p during membrane fusion

H Xu, Y Jun, J Thompson, J Yates, W Wickner - The EMBO journal, 2010 - embopress.org
SNARE‐dependent membrane fusion requires the disassembly of cis‐SNARE complexes
(formed by SNAREs anchored to one membrane) followed by the assembly of trans‐SNARE …

Large-scale prediction of protein-protein interactions from structures

M Hue, M Riffle, JP Vert, WS Noble - BMC bioinformatics, 2010 - Springer
Background The prediction of protein-protein interactions is an important step toward the
elucidation of protein functions and the understanding of the molecular mechanisms inside …

Predicting co-complexed protein pairs from heterogeneous data

J Qiu, WS Noble - PLoS computational biology, 2008 - journals.plos.org
Proteins do not carry out their functions alone. Instead, they often act by participating in
macromolecular complexes and play different functional roles depending on the other …

A novel N-terminal domain may dictate the glucose response of Mondo proteins

LG McFerrin, WR Atchley - PloS one, 2012 - journals.plos.org
Glucose is a fundamental energy source for both prokaryotes and eukaryotes. The balance
between glucose utilization and storage is integral for proper energy homeostasis, and …

Proteomics data repositories

M Riffle, JK Eng - Proteomics, 2009 - Wiley Online Library
The field of proteomics, particularly the application of MS analysis to protein samples, is well
established and growing rapidly. Proteomic studies generate large volumes of raw …