[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses
The application of multivariate statistical analyses has become a consistent feature in
microbial ecology. However, many microbial ecologists are still in the process of develo** …
microbial ecology. However, many microbial ecologists are still in the process of develo** …
Spatiotemporal dynamics of the archaeal community in coastal sediments: assembly process and co-occurrence relationship
Studies of marine benthic archaeal communities are updating our view of their taxonomic
composition and metabolic versatility. However, large knowledge gaps remain with regard to …
composition and metabolic versatility. However, large knowledge gaps remain with regard to …
Hydrocarbon-degrading bacteria and the bacterial community response in Gulf of Mexico beach sands impacted by the Deepwater Horizon oil spill
ABSTRACT A significant portion of oil from the recent Deepwater Horizon (DH) oil spill in the
Gulf of Mexico was transported to the shoreline, where it may have severe ecological and …
Gulf of Mexico was transported to the shoreline, where it may have severe ecological and …
Global dispersion and local diversification of the methane seep microbiome
Methane seeps are widespread seafloor ecosystems shaped by the emission of gas from
seabed reservoirs. The microorganisms inhabiting methane seeps transform the chemical …
seabed reservoirs. The microorganisms inhabiting methane seeps transform the chemical …
Chemistry, biosynthesis and biological activity of terpenoids and meroterpenoids in bacteria and fungi isolated from different marine habitats
The marine environment with its vast biological diversity encompasses many organisms that
produce bioactive natural products. Marine microorganisms are rich sources of compounds …
produce bioactive natural products. Marine microorganisms are rich sources of compounds …
Core sediment bacteria drive community response to anthropogenic contamination over multiple environmental gradients
In this study, 454 pyrosequencing of the 16 S r RNA gene was used to investigate sediment
bacterial community response to contaminant disturbance across six estuaries with differing …
bacterial community response to contaminant disturbance across six estuaries with differing …
Diversity and dynamics of rare and of resident bacterial populations in coastal sands
A Gobet, SI Böer, SM Huse… - The ISME …, 2012 - academic.oup.com
Coastal sands filter and accumulate organic and inorganic materials from the terrestrial and
marine environment, and thus provide a high diversity of microbial niches. Sands of …
marine environment, and thus provide a high diversity of microbial niches. Sands of …
Studying bacterial multispecies biofilms: where to start?
The high prevalence and significance of multispecies biofilms have now been demonstrated
in various bacterial habitats with medical, industrial, and ecological relevance. It is highly …
in various bacterial habitats with medical, industrial, and ecological relevance. It is highly …
Vertical diversity and association pattern of total, abundant and rare microbial communities in deep‐sea sediments
Microbial abundance and community composition in marine sediments have been widely
explored. However, high‐resolution vertical changes of benthic microbial diversity and co …
explored. However, high‐resolution vertical changes of benthic microbial diversity and co …