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Characterizing micro-to-millisecond chemical exchange in nucleic acids using off-resonance R1ρ relaxation dispersion
This review describes off-resonance R 1ρ relaxation dispersion NMR methods for
characterizing microsecond-to-millisecond chemical exchange in uniformly 13 C/15 N …
characterizing microsecond-to-millisecond chemical exchange in uniformly 13 C/15 N …
DNA mismatches reveal conformational penalties in protein–DNA recognition
Transcription factors recognize specific genomic sequences to regulate complex gene-
expression programs. Although it is well-established that transcription factors bind to specific …
expression programs. Although it is well-established that transcription factors bind to specific …
Structural insights into tautomeric dynamics in nucleic acids and in antiviral nucleoside analogs
DNA (2′-deoxyribonucleic acid) and RNA (ribonucleic acid) play diverse functional roles in
biology and disease. Despite being comprised primarily of only four cognate nucleobases …
biology and disease. Despite being comprised primarily of only four cognate nucleobases …
Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction
Biomolecules form dynamic ensembles of many inter-converting conformations which are
key for understanding how they fold and function. However, determining ensembles is …
key for understanding how they fold and function. However, determining ensembles is …
High-order quantum-mechanical analysis of hydrogen bonding in hachimoji and natural DNA base pairs
High-order quantum chemistry is applied to hydrogen-bonded natural DNA nucleobase
pairs [adenine: thymine (A: T) and guanine: cytosine (G: C)] and non-natural Hachimoji …
pairs [adenine: thymine (A: T) and guanine: cytosine (G: C)] and non-natural Hachimoji …
A quantitative model predicts how m6A reshapes the kinetic landscape of nucleic acid hybridization and conformational transitions
ABSTRACT N 6-methyladenosine (m6A) is a post-transcriptional modification that controls
gene expression by recruiting proteins to RNA sites. The modification also slows …
gene expression by recruiting proteins to RNA sites. The modification also slows …
Probing Watson-Crick and Hoogsteen base pairing in duplex DNA using dynamic nuclear polarization solid-state NMR spectroscopy
The majority of base pairs in double-stranded DNA exist in the canonical Watson-Crick
geometry. However, they can also adopt alternate Hoogsteen conformations in various …
geometry. However, they can also adopt alternate Hoogsteen conformations in various …
1-Deazaguanosine-modified RNA: The missing piece for functional RNA atomic mutagenesis
R Bereiter, E Renard, K Breuker, C Kreutz… - Journal of the …, 2022 - ACS Publications
Atomic mutagenesis is the key to advance our understanding of RNA recognition and RNA
catalysis. To this end, deazanucleosides are utilized to evaluate the participation of specific …
catalysis. To this end, deazanucleosides are utilized to evaluate the participation of specific …
Probing conformational transitions towards mutagenic Watson–Crick-like G·T mismatches using off-resonance sugar carbon R1ρ relaxation dispersion
NMR off-resonance R 1ρ relaxation dispersion measurements on base carbon and nitrogen
nuclei have revealed that wobble G· T/U mismatches in DNA and RNA duplexes exist in …
nuclei have revealed that wobble G· T/U mismatches in DNA and RNA duplexes exist in …
Application of FTIR spectroscopy to analyze RNA structure
Fourier transform infrared (FTIR) spectroscopy has been widely used for the analysis of both
protein and nucleic acid secondary structure. This is one of the vibration spectroscopy …
protein and nucleic acid secondary structure. This is one of the vibration spectroscopy …