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Machine-designed biotherapeutics: opportunities, feasibility and advantages of deep learning in computational antibody discovery
W Wilman, S Wróbel, W Bielska… - Briefings in …, 2022 - academic.oup.com
Antibodies are versatile molecular binders with an established and growing role as
therapeutics. Computational approaches to develo** and designing these molecules are …
therapeutics. Computational approaches to develo** and designing these molecules are …
Assessing developability early in the discovery process for novel biologics
Beyond potency, a good developability profile is a key attribute of a biological drug.
Selecting and screening for such attributes early in the drug development process can save …
Selecting and screening for such attributes early in the drug development process can save …
Accelerating Bayesian optimization for biological sequence design with denoising autoencoders
Bayesian optimization (BayesOpt) is a gold standard for query-efficient continuous
optimization. However, its adoption for drug design has been hindered by the discrete, high …
optimization. However, its adoption for drug design has been hindered by the discrete, high …
Machine learning optimization of candidate antibody yields highly diverse sub-nanomolar affinity antibody libraries
Therapeutic antibodies are an important and rapidly growing drug modality. However, the
design and discovery of early-stage antibody therapeutics remain a time and cost-intensive …
design and discovery of early-stage antibody therapeutics remain a time and cost-intensive …
Regression transformer enables concurrent sequence regression and generation for molecular language modelling
Despite tremendous progress of generative models in the natural sciences, their
controllability remains challenging. One fundamentally missing aspect of molecular or …
controllability remains challenging. One fundamentally missing aspect of molecular or …
In vivo neutralization of coral snake venoms with an oligoclonal nanobody mixture in a murine challenge model
Oligoclonal mixtures of broadly-neutralizing antibodies can neutralize complex compositions
of similar and dissimilar antigens, making them versatile tools for the treatment of eg …
of similar and dissimilar antigens, making them versatile tools for the treatment of eg …
The RESP AI model accelerates the identification of tight-binding antibodies
J Parkinson, R Hard, W Wang - Nature communications, 2023 - nature.com
High-affinity antibodies are often identified through directed evolution, which may require
many iterations of mutagenesis and selection to find an optimal candidate. Deep learning …
many iterations of mutagenesis and selection to find an optimal candidate. Deep learning …
End-to-end meta-bayesian optimisation with transformer neural processes
Meta-Bayesian optimisation (meta-BO) aims to improve the sample efficiency of Bayesian
optimisation by leveraging data from related tasks. While previous methods successfully …
optimisation by leveraging data from related tasks. While previous methods successfully …
Antibody optimization enabled by artificial intelligence predictions of binding affinity and naturalness
Traditional antibody optimization approaches involve screening a small subset of the
available sequence space, often resulting in drug candidates with suboptimal binding …
available sequence space, often resulting in drug candidates with suboptimal binding …
Ai models for protein design are driving antibody engineering
Therapeutic antibody engineering seeks to identify antibody sequences with specific binding
to a target and optimized drug-like properties. When guided by deep learning, antibody …
to a target and optimized drug-like properties. When guided by deep learning, antibody …