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A review of the pangenome: how it affects our understanding of genomic variation, selection and breeding in domestic animals?
Y Gong, Y Li, X Liu, Y Ma, L Jiang - Journal of Animal Science and …, 2023 - Springer
As large-scale genomic studies have progressed, it has been revealed that a single
reference genome pattern cannot represent genetic diversity at the species level. While …
reference genome pattern cannot represent genetic diversity at the species level. While …
Technological development and advances for constructing and analyzing plant pangenomes
A pangenome captures the genomic diversity for a species, derived from a collection of
genetic sequences of diverse populations. Advances in sequencing technologies have …
genetic sequences of diverse populations. Advances in sequencing technologies have …
Evolutionary origin of genomic structural variations in domestic yaks
X Liu, W Liu, JA Lenstra, Z Zheng, X Wu, J Yang… - Nature …, 2023 - nature.com
Yak has been subject to natural selection, human domestication and interspecific
introgression during its evolution. However, genetic variants favored by each of these …
introgression during its evolution. However, genetic variants favored by each of these …
[HTML][HTML] Large-scale genomic and transcriptomic analyses elucidate the genetic basis of high meat yield in chickens
Introduction Investigating the genetic markers and genomic signatures related to chicken
meat production by combing multi-omics methods could provide new insights into modern …
meat production by combing multi-omics methods could provide new insights into modern …
[PDF][PDF] De novo assembly of 20 chicken genomes reveals the undetectable phenomenon for thousands of core genes on microchromosomes and subtelomeric regions
The gene numbers and evolutionary rates of birds were assumed to be much lower than
those of mammals, which is in sharp contrast to the huge species number and …
those of mammals, which is in sharp contrast to the huge species number and …
A nuclear genome assembly of an extinct flightless bird, the little bush moa
We present a draft genome of the little bush moa (Anomalopteryx didiformis)—one of
approximately nine species of extinct flightless birds from Aotearoa, New Zealand—using …
approximately nine species of extinct flightless birds from Aotearoa, New Zealand—using …
The pig pangenome provides insights into the roles of coding structural variations in genetic diversity and adaptation
Z Li, X Liu, C Wang, Z Li, B Jiang, R Zhang… - Genome …, 2023 - genome.cshlp.org
Structural variations have emerged as an important driving force for genome evolution and
phenotypic variation in various organisms, yet their contributions to genetic diversity and …
phenotypic variation in various organisms, yet their contributions to genetic diversity and …
Duck pan‐genome reveals two transposon insertions caused bodyweight enlarging and white plumage phenotype formation during evolution
K Wang, G Hua, J Li, Y Yang, C Zhang, L Yang, X Hu… - Imeta, 2024 - Wiley Online Library
Structural variations (SVs) are a major source of domestication and improvement traits. We
present the first duck pan‐genome constructed using five genome assemblies capturing∼ …
present the first duck pan‐genome constructed using five genome assemblies capturing∼ …
Fourth report on chicken genes and chromosomes 2022
The chicken continues to hold its position as a leading model organism within many areas of
research, as well as being a major source of protein for human consumption. The First …
research, as well as being a major source of protein for human consumption. The First …
Elucidation of the genetic determination of body weight and size in Chinese local chicken breeds by large-scale genomic analyses
J Wang, J Liu, Q Lei, Z Liu, H Han, S Zhang, C Qi… - BMC genomics, 2024 - Springer
Background Body weight and size are important economic traits in chickens. While many
growth-related quantitative trait loci (QTLs) and candidate genes have been identified …
growth-related quantitative trait loci (QTLs) and candidate genes have been identified …