The biofilm life cycle: expanding the conceptual model of biofilm formation

K Sauer, P Stoodley, DM Goeres… - Nature Reviews …, 2022 - nature.com
Bacterial biofilms are often defined as communities of surface-attached bacteria and are
typically depicted with a classic mushroom-shaped structure characteristic of Pseudomonas …

Gradients and consequences of heterogeneity in biofilms

J Jo, A Price-Whelan, LEP Dietrich - Nature Reviews Microbiology, 2022 - nature.com
Historically, appreciation for the roles of resource gradients in biology has fluctuated
inversely to the popularity of genetic mechanisms. Nevertheless, in microbiology specifically …

Microbial community resilience across ecosystems and multiple disturbances

L Philippot, BS Griffiths… - … and Molecular Biology …, 2021 - journals.asm.org
The ability of ecosystems to withstand disturbances and maintain their functions is being
increasingly tested as rates of change intensify due to climate change and other human …

Spatial structure, chemotaxis and quorum sensing shape bacterial biomass accumulation in complex porous media

D Scheidweiler, AD Bordoloi, W Jiao… - Nature …, 2024 - nature.com
Biological tissues, sediments, or engineered systems are spatially structured media with a
tortuous and porous structure that host the flow of fluids. Such complex environments can …

Droplet printing reveals the importance of micron-scale structure for bacterial ecology

R Krishna Kumar, TA Meiller-Legrand… - Nature …, 2021 - nature.com
Bacteria often live in diverse communities where the spatial arrangement of strains and
species is considered critical for their ecology. However, a test of this hypothesis requires …

Short-range quorum sensing controls horizontal gene transfer at micron scale in bacterial communities

J van Gestel, T Bareia, B Tenennbaum… - Nature …, 2021 - nature.com
In bacterial communities, cells often communicate by the release and detection of small
diffusible molecules, a process termed quorum-sensing. Signal molecules are thought to …

Spatial transcriptome uncovers rich coordination of metabolism in E. coli K12 biofilm

T Wang, P Shen, Y He, Y Zhang, J Liu - Nature Chemical Biology, 2023 - nature.com
Microbial communities often display region-specific properties, which give rise to complex
interactions and emergent behaviors that are critical to the homeostasis and stress response …

Microfluidics as an emerging platform for exploring soil environmental processes: a critical review

X Zhu, K Wang, H Yan, C Liu, X Zhu… - Environmental science & …, 2022 - ACS Publications
Investigating environmental processes, especially those occurring in soils, calls for
innovative and multidisciplinary technologies that can provide insights at the microscale …

Advances and opportunities in image analysis of bacterial cells and communities

H Jeckel, K Drescher - FEMS Microbiology Reviews, 2021 - academic.oup.com
The cellular morphology and sub-cellular spatial structure critically influence the function of
microbial cells. Similarly, the spatial arrangement of genotypes and phenotypes in microbial …

Metabolic heterogeneity and cross-feeding in bacterial multicellular systems

CR Evans, CP Kempes, A Price-Whelan… - Trends in …, 2020 - cell.com
Cells in assemblages differentiate and perform distinct roles. Though many pathways of
differentiation are understood at the molecular level in multicellular eukaryotes, the …