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Epistasis and adaptation on fitness landscapes
C Bank - Annual Review of Ecology, Evolution, and Systematics, 2022 - annualreviews.org
Epistasis occurs when the effect of a mutation depends on its carrier's genetic background.
Despite increasing evidence that epistasis for fitness is common, its role during evolution is …
Despite increasing evidence that epistasis for fitness is common, its role during evolution is …
Empirical fitness landscapes and the predictability of evolution
The genotype–fitness map (that is, the fitness landscape) is a key determinant of evolution,
yet it has mostly been used as a superficial metaphor because we know little about its …
yet it has mostly been used as a superficial metaphor because we know little about its …
Statistically learning the functional landscape of microbial communities
Microbial consortia exhibit complex functional properties in contexts ranging from soils to
bioreactors to human hosts. Understanding how community composition determines …
bioreactors to human hosts. Understanding how community composition determines …
A rugged yet easily navigable fitness landscape
Fitness landscape theory predicts that rugged landscapes with multiple peaks impair
Darwinian evolution, but experimental evidence is limited. In this study, we used genome …
Darwinian evolution, but experimental evidence is limited. In this study, we used genome …
Long-term dynamics of adaptation in asexual populations
Experimental studies of evolution have increased greatly in number in recent years,
stimulated by the growing power of genomic tools. However, organismal fitness remains the …
stimulated by the growing power of genomic tools. However, organismal fitness remains the …
Adaptation in protein fitness landscapes is facilitated by indirect paths
The structure of fitness landscapes is critical for understanding adaptive protein evolution.
Previous empirical studies on fitness landscapes were confined to either the neighborhood …
Previous empirical studies on fitness landscapes were confined to either the neighborhood …
Inferring the shape of global epistasis
Genotype–phenotype relationships are notoriously complicated. Idiosyncratic interactions
between specific combinations of mutations occur and are difficult to predict. Yet it is …
between specific combinations of mutations occur and are difficult to predict. Yet it is …
Evolution in the light of fitness landscape theory
By formalizing the relationship between genotype or phenotype and fitness, fitness
landscapes harbor information on molecular and evolutionary constraints. The shape of the …
landscapes harbor information on molecular and evolutionary constraints. The shape of the …
Protein engineering via Bayesian optimization-guided evolutionary algorithm and robotic experiments
Directed protein evolution applies repeated rounds of genetic mutagenesis and phenotypic
screening and is often limited by experimental throughput. Through in silico prioritization of …
screening and is often limited by experimental throughput. Through in silico prioritization of …
Should evolutionary geneticists worry about higher-order epistasis?
Natural selection drives evolving populations up the fitness landscape, the projection from
nucleotide sequence space to organismal reproductive success. While it has long been …
nucleotide sequence space to organismal reproductive success. While it has long been …