Waterborne pathogens: detection methods and challenges

FY Ramírez-Castillo, A Loera-Muro, M Jacques… - Pathogens, 2015 - mdpi.com
Waterborne pathogens and related diseases are a major public health concern worldwide,
not only by the morbidity and mortality that they cause, but by the high cost that represents …

Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis

TM Porter, M Hajibabaei - Molecular ecology, 2018 - Wiley Online Library
The purpose of this review is to present the most common and emerging DNA‐based
methods used to generate data for biodiversity and biomonitoring studies. As environmental …

[HTML][HTML] The airway microbiome in patients with severe asthma: associations with disease features and severity

YJ Huang, S Nariya, JM Harris, SV Lynch… - Journal of Allergy and …, 2015 - Elsevier
Background Asthma is heterogeneous, and airway dysbiosis is associated with clinical
features in patients with mild-to-moderate asthma. Whether similar relationships exist among …

[HTML][HTML] Chronic kidney disease alters intestinal microbial flora

ND Vaziri, J Wong, M Pahl, YM Piceno, J Yuan… - Kidney international, 2013 - Elsevier
The population of microbes (microbiome) in the intestine is a symbiotic ecosystem conferring
trophic and protective functions. Since the biochemical environment shapes the structure …

Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism

I Vujkovic-Cvi**, RM Dunham, S Iwai… - Science translational …, 2013 - science.org
Progressive HIV infection is characterized by dysregulation of the intestinal immune barrier,
translocation of immunostimulatory microbial products, and chronic systemic inflammation …

[HTML][HTML] Induction of intestinal Th17 cells by segmented filamentous bacteria

II Ivanov, K Atarashi, N Manel, EL Brodie, T Shima… - Cell, 2009 - cell.com
The gastrointestinal tract of mammals is inhabited by hundreds of distinct species of
commensal microorganisms that exist in a mutualistic relationship with the host. How …

Effects of early-life exposure to allergens and bacteria on recurrent wheeze and atopy in urban children

SV Lynch, RA Wood, H Boushey, LB Bacharier… - Journal of Allergy and …, 2014 - Elsevier
Background Wheezing illnesses cause major morbidity in infants and are frequent
precursors to asthma. Objective We sought to examine environmental factors associated …

Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma

YJ Huang, CE Nelson, EL Brodie, TZ DeSantis… - Journal of Allergy and …, 2011 - Elsevier
BACKGROUND: Improvement in lung function after macrolide antibiotic therapy has been
attributed to reduction in bronchial infection by specific bacteria. However, the airway might …

Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance

KC Goldfarb, U Karaoz, CA Hanson… - Frontiers in …, 2011 - frontiersin.org
Soils are immensely diverse microbial habitats with thousands of co-existing bacterial,
archaeal, and fungal species. Across broad spatial scales, factors such as pH and soil …

Compost: its role, mechanism and impact on reducing soil-borne plant diseases

CM Mehta, U Palni, IH Franke-Whittle, AK Sharma - Waste management, 2014 - Elsevier
Soil-borne plant pathogens are responsible for causing many crop plant diseases, resulting
in significant economic losses. Compost application to agricultural fields is an excellent …