Intertwining phylogenetic trees and networks

K Schliep, AA Potts, DA Morrison, GW Grimm - 2016 - peerj.com
The fields of phylogenetic tree and network inference have dramatically advanced in the last
decade, but independently with few attempts to bridge them. Here we provide a framework …

Population genetics revisited–towards a multidisciplinary research field

JC Habel, FE Zachos, L Dapporto… - Biological Journal of …, 2015 - academic.oup.com
Population genetic research has transformed from the study of genetic structures into a
much wider and highly multidisciplinary research field. In this contribution, we outline the …

Analysis of haplotype networks: The randomized minimum spanning tree method

E Paradis - Methods in Ecology and Evolution, 2018 - Wiley Online Library
Haplotype network construction is a widely used approach for analysing and visualizing the
relationships among DNA sequences within a population or species. This approach has …

Evolution of pollination niches and floral divergence in the generalist plant Erysimum mediohispanicum

JM Gomez, AJ Munoz-Pajares, M Abdelaziz… - Annals of …, 2014 - academic.oup.com
Background and Aims How generalist plants diverge in response to pollinator selection
without becoming specialized is still unknown. This study explores this question, focusing on …

Population differentiation of 2 forms of Bryde's whales in the Indian and Pacific Oceans

F Kershaw, MS Leslie, T Collins, RM Mansur… - Journal of …, 2013 - academic.oup.com
Accurate identification of units for conservation is particularly challenging for marine species
as obvious barriers to gene flow are generally lacking. Bryde's whales (Balaenoptera spp.) …

Fitchi: haplotype genealogy graphs based on the Fitch algorithm

M Matschiner - Bioinformatics, 2016 - academic.oup.com
In population genetics and phylogeography, haplotype genealogy graphs are important
tools for the visualization of population structure based on sequence data. In this type of …

Can Environment Predict Cryptic Diversity? The Case of Niphargus Inhabiting Western Carpathian Groundwater

IN Meleg, V Zakšek, C Fišer, BS Kelemen… - PLoS …, 2013 - journals.plos.org
In the last decade, several studies have shown that subterranean aquatic habitats harbor
cryptic species with restricted geographic ranges, frequently occurring as isolated …

Structural diversities and phylogenetic signals in plastomes of the early-divergent angiosperms: a case study in Saxifragales

S Han, H Ding, D Bi, S Zhang, R Yi, J Gao, J Yang… - Plants, 2022 - mdpi.com
As representative of the early-divergent groups of angiosperms, Saxifragales is extremely
divergent in morphology, comprising 15 families. Within this order, our previous case studies …

Genealogies: pedigrees and phylogenies are reticulating networks not just divergent trees

DA Morrison - Evolutionary biology, 2016 - Springer
Pedigrees illustrate the genealogical relationships among individuals, and phylogenies do
the same for groups of organisms (such as species, genera, etc.). Here, I provide a brief …

Genetic variability and relationship of banana cultivars (Musa L.) from East Java, Indonesia based on the internal transcribed spacer region nrDNA sequences

L Hapsari, R Azrianingsih… - Journal of Tropical …, 2018 - jurcon.ums.edu.my
A genetic variability and relationship study subjected to 41 banana cultivars from East Java
based on nrDNA sequences of the ITS region was conducted. It would be useful to consider …