Can tautomerization of the A·T Watson–Crick base pair via double proton transfer provoke point mutations during DNA replication? A comprehensive QM and QTAIM …

OO Brovarets, DM Hovorun - Journal of Biomolecular Structure and …, 2014 - Taylor & Francis
Trying to answer the question posed in the title, we have carried out a detailed theoretical
investigation of the biologically important mechanism of the tautomerization of the A· T …

Dimers of formic acid: Structures, stability, and double proton transfer

P Farfán, A Echeverri, E Diaz, JD Tapia… - The Journal of …, 2017 - pubs.aip.org
A stochastic search of the potential energy surface for the formic acid dimers results in 21
well-defined minima. A number of structures are reported here for the first time, others have …

The reaction electronic flux: A new descriptor of the electronic activity taking place during a chemical reaction. Application to the characterization of the mechanism of …

P Flores-Morales, S Gutiérrez-Oliva, E Silva… - Journal of Molecular …, 2010 - Elsevier
Within the framework defined by the reaction force analysis, the reaction electronic flux, a
new descriptor proposed to characterize the electronic activity that takes place during a …

Insight into the Mechanism of the Michael Reaction

C Giraldo, S Gómez, F Weinhold… - ChemPhysChem, 2016 - Wiley Online Library
The mechanism for the nucleophilic addition step of the Michael reaction between
methanethiol as a model Michael donor and several α‐substituted methyl acrylates (X= F …

Insights into cisplatin binding to uracil and thiouracils from IRMPD spectroscopy and tandem mass spectrometry

D Corinti, ME Crestoni, B Chiavarino… - Journal of the …, 2020 - ACS Publications
The monofunctional primary complexes cis-[PtCl (NH3) 2 (L)]+, formed by the reaction of
cisplatin, a major chemotherapeutic agent, with four nucleobases L, ie, uracil (U), 2 …

The transition state region in nonsynchronous concerted reactions

S Gómez, N Rojas-Valencia, A Toro-Labbé… - The Journal of …, 2023 - pubs.aip.org
The critical and vanishing points of the reaction force F (ξ)=− dV (ξ)/dξ yield five important
coordinates (ξ R, ξ R*⁠, ξ TS, ξ P*⁠, ξ P) along the intrinsic reaction coordinate (IRC) for a …

The physico-chemical “anatomy” of the tautomerization through the DPT of the biologically important pairs of hypoxanthine with DNA bases: QM and QTAIM …

OO Brovarets', RO Zhurakivsky… - Journal of Molecular …, 2013 - Springer
The biologically important tautomerization of the Hyp· Cyt, Hyp*· Thy and Hyp· Hyp base
pairs to the Hyp*· Cyt*, Hyp· Thy* and Hyp*· Hyp* base pairs, respectively, by the double …

Using the reaction force and the reaction electronic flux on the proton transfer of formamide derived systems

R Inostroza-Rivera, B Herrera… - Physical Chemistry …, 2014 - pubs.rsc.org
In this work, we present a theoretical study of the mechanism of double proton transfer in
formamide, formamide–thioformamide and thioformamide dimers. The reaction mechanisms …

Oxidation reactions of 2-thiouracil: a theoretical and pulse radiolysis study

KP Prasanthkumar, CH Suresh… - The Journal of …, 2012 - ACS Publications
The reaction of hydroxyl radical (• OH) with the nucleic acid base analogue 2-thiouracil (1)
has been studied by pulse radiolysis experiments and DFT. The generic intermediate …

A TDDFT study on the singlet and triplet excited-state hydrogen bonding and proton transfer of 10-hydroxybenzo [h] quinoline (HBQ) and 7, 9-diiodo-10-hydroxybenzo …

X Zhao, M Chen - Chemical Physics Letters, 2011 - Elsevier
The singlet and triplet excited state as well as the influence of an iodine on the steady-
spectra of 10-hydroxybenzo [h] quinoline (HBQ) and 7, 9-diiodo-10-hydroxybenzo [h] …