Signal propagation in complex networks
Signal propagation in complex networks drives epidemics, is responsible for information
going viral, promotes trust and facilitates moral behavior in social groups, enables the …
going viral, promotes trust and facilitates moral behavior in social groups, enables the …
Network neuroscience
Despite substantial recent progress, our understanding of the principles and mechanisms
underlying complex brain function and cognition remains incomplete. Network neuroscience …
underlying complex brain function and cognition remains incomplete. Network neuroscience …
Apache spark: a unified engine for big data processing
Apache Spark: a unified engine for big data processing Page 1 56 COMMUNICATIONS OF THE
ACM | NOVEMBER 2016 | VOL. 59 | NO. 11 contributed articles DOI:10.1145/2934664 This …
ACM | NOVEMBER 2016 | VOL. 59 | NO. 11 contributed articles DOI:10.1145/2934664 This …
Simultaneous denoising, deconvolution, and demixing of calcium imaging data
We present a modular approach for analyzing calcium imaging recordings of large neuronal
ensembles. Our goal is to simultaneously identify the locations of the neurons, demix …
ensembles. Our goal is to simultaneously identify the locations of the neurons, demix …
Dimensionality reduction for large-scale neural recordings
Most sensory, cognitive and motor functions depend on the interactions of many neurons. In
recent years, there has been rapid development and increasing use of technologies for …
recent years, there has been rapid development and increasing use of technologies for …
Suite2p: beyond 10,000 neurons with standard two-photon microscopy
The combination of two-photon microscopy recordings and powerful calcium-dependent
fluorescent sensors enables simultaneous recording of unprecedentedly large populations …
fluorescent sensors enables simultaneous recording of unprecedentedly large populations …
CaImAn an open source tool for scalable calcium imaging data analysis
Advances in fluorescence microscopy enable monitoring larger brain areas in-vivo with finer
time resolution. The resulting data rates require reproducible analysis pipelines that are …
time resolution. The resulting data rates require reproducible analysis pipelines that are …
Spike sorting for large, dense electrode arrays
Developments in microfabrication technology have enabled the production of neural
electrode arrays with hundreds of closely spaced recording sites, and electrodes with …
electrode arrays with hundreds of closely spaced recording sites, and electrodes with …
Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo
We describe an all-optical strategy for simultaneously manipulating and recording the
activity of multiple neurons with cellular resolution in vivo. We performed simultaneous two …
activity of multiple neurons with cellular resolution in vivo. We performed simultaneous two …
Rastermap: a discovery method for neural population recordings
Neurophysiology has long progressed through exploratory experiments and chance
discoveries. Anecdotes abound of researchers listening to spikes in real time and noticing …
discoveries. Anecdotes abound of researchers listening to spikes in real time and noticing …