Signal propagation in complex networks

P Ji, J Ye, Y Mu, W Lin, Y Tian, C Hens, M Perc, Y Tang… - Physics reports, 2023 - Elsevier
Signal propagation in complex networks drives epidemics, is responsible for information
going viral, promotes trust and facilitates moral behavior in social groups, enables the …

Network neuroscience

DS Bassett, O Sporns - Nature neuroscience, 2017 - nature.com
Despite substantial recent progress, our understanding of the principles and mechanisms
underlying complex brain function and cognition remains incomplete. Network neuroscience …

Apache spark: a unified engine for big data processing

M Zaharia, RS **n, P Wendell, T Das… - Communications of the …, 2016 - dl.acm.org
Apache Spark: a unified engine for big data processing Page 1 56 COMMUNICATIONS OF THE
ACM | NOVEMBER 2016 | VOL. 59 | NO. 11 contributed articles DOI:10.1145/2934664 This …

Simultaneous denoising, deconvolution, and demixing of calcium imaging data

EA Pnevmatikakis, D Soudry, Y Gao, TA Machado… - Neuron, 2016 - cell.com
We present a modular approach for analyzing calcium imaging recordings of large neuronal
ensembles. Our goal is to simultaneously identify the locations of the neurons, demix …

Dimensionality reduction for large-scale neural recordings

JP Cunningham, BM Yu - Nature neuroscience, 2014 - nature.com
Most sensory, cognitive and motor functions depend on the interactions of many neurons. In
recent years, there has been rapid development and increasing use of technologies for …

Suite2p: beyond 10,000 neurons with standard two-photon microscopy

M Pachitariu, C Stringer, S Schröder, M Dipoppa… - BioRxiv, 2016 - biorxiv.org
The combination of two-photon microscopy recordings and powerful calcium-dependent
fluorescent sensors enables simultaneous recording of unprecedentedly large populations …

CaImAn an open source tool for scalable calcium imaging data analysis

A Giovannucci, J Friedrich, P Gunn, J Kalfon, BL Brown… - elife, 2019 - elifesciences.org
Advances in fluorescence microscopy enable monitoring larger brain areas in-vivo with finer
time resolution. The resulting data rates require reproducible analysis pipelines that are …

Spike sorting for large, dense electrode arrays

C Rossant, SN Kadir, DFM Goodman, J Schulman… - Nature …, 2016 - nature.com
Developments in microfabrication technology have enabled the production of neural
electrode arrays with hundreds of closely spaced recording sites, and electrodes with …

Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo

AM Packer, LE Russell, HWP Dalgleish, M Häusser - Nature methods, 2015 - nature.com
We describe an all-optical strategy for simultaneously manipulating and recording the
activity of multiple neurons with cellular resolution in vivo. We performed simultaneous two …

Rastermap: a discovery method for neural population recordings

C Stringer, L Zhong, A Syeda, F Du, M Kesa… - Nature …, 2024 - nature.com
Neurophysiology has long progressed through exploratory experiments and chance
discoveries. Anecdotes abound of researchers listening to spikes in real time and noticing …