Network analysis of multivariate data in psychological science

D Borsboom, MK Deserno, M Rhemtulla… - Nature Reviews …, 2021 - nature.com
In recent years, network analysis has been applied to identify and analyse patterns of
statistical association in multivariate psychological data. In these approaches, network …

A comprehensive survey on community detection with deep learning

X Su, S Xue, F Liu, J Wu, J Yang, C Zhou… - … on Neural Networks …, 2022 - ieeexplore.ieee.org
Detecting a community in a network is a matter of discerning the distinct features and
connections of a group of members that are different from those in other communities. The …

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

L Haghverdi, ATL Lun, MD Morgan, JC Marioni - Nature biotechnology, 2018 - nature.com
Large-scale single-cell RNA sequencing (scRNA-seq) data sets that are produced in
different laboratories and at different times contain batch effects that may compromise the …

Community detection in networks: A user guide

S Fortunato, D Hric - Physics reports, 2016 - Elsevier
Community detection in networks is one of the most popular topics of modern network
science. Communities, or clusters, are usually groups of vertices having higher probability of …

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

FA Wolf, FK Hamey, M Plass, J Solana, JS Dahlin… - Genome biology, 2019 - Springer
Single-cell RNA-seq quantifies biological heterogeneity across both discrete cell types and
continuous cell transitions. Partition-based graph abstraction (PAGA) provides an …

Community detection in graphs

S Fortunato - Physics reports, 2010 - Elsevier
The modern science of networks has brought significant advances to our understanding of
complex systems. One of the most relevant features of graphs representing real systems is …

Fake news on Twitter during the 2016 US presidential election

N Grinberg, K Joseph, L Friedland, B Swire-Thompson… - Science, 2019 - science.org
The spread of fake news on social media became a public concern in the United States after
the 2016 presidential election. We examined exposure to and sharing of fake news by …

Fast unfolding of communities in large networks

VD Blondel, JL Guillaume, R Lambiotte… - Journal of statistical …, 2008 - iopscience.iop.org
We propose a simple method to extract the community structure of large networks. Our
method is a heuristic method that is based on modularity optimization. It is shown to …

Molecular ecological network analyses

Y Deng, YH Jiang, Y Yang, Z He, F Luo, J Zhou - BMC bioinformatics, 2012 - Springer
Background Understanding the interaction among different species within a community and
their responses to environmental changes is a central goal in ecology. However, defining …

Finding community structure in networks using the eigenvectors of matrices

MEJ Newman - Physical Review E—Statistical, Nonlinear, and Soft …, 2006 - APS
We consider the problem of detecting communities or modules in networks, groups of
vertices with a higher-than-average density of edges connecting them. Previous work …